STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9167Hypothetical protein. (65 aa)    
Predicted Functional Partners:
RB9164
Conserved hypothetical protein-putative thiol-disulfide isomerase or thioredoxin; Best DB hits: BLAST: pir:G70687; hypothetical protein Rv1732c - Mycobacterium; E=5e-13 pir:S75290; hypothetical protein sll1289 - Synechocystis sp. (strain; E=6e-11 gb:AAG19194.1; (AE005016) Vng0711c [Halobacterium sp. NRC-1]; E=1e-10 COG: Rv1732c; COG0526 Thiol-disulfide isomerase and thioredoxins; E=5e-14 DR2242; COG0450 Thiol - alkyl hydroperoxide reductases; E=4e-06 BS_yneN; COG0526 Thiol-disulfide isomerase and thioredoxins; E=5e-06 PFAM: PF00578; AhpC/TSA family; E=0.00037 PF00255; Glutathione perox [...]
       0.773
RB9168
Nucleotide sugar epimerase; PMID: 10531250 best DB hits: BLAST: pir:G70415; nucleotide sugar epimerase - Aquifex aeolicus -----; E=5e-90 ddbj:BAB07428.1; (AP001519) nucleotide sugar epimerase; E=6e-57 gb:AAD50494.1; AF172324_12 (AF172324) WbnF [Escherichia coli]; E=2e-55 COG: aq_1335; COG0451 Nucleoside-diphosphate-sugar epimerases; E=5e-91 XF0255; COG1088 dTDP-D-glucose 4,6-dehydratase; E=1e-23 PA1384; COG1087 UDP-glucose 4-epimerase; E=1e-23 PFAM: PF00106; short chain dehydrogenase; E=0.16 PF01370; NAD dependent epimerase/dehydratase; E=8.9e-98.
       0.718
RB9161
Hypothetical protein-putative metallopeptidase.
       0.686
wecB
PMID: 8226648 best DB hits: BLAST: pir:A82264; UDP-N-acetylglucosamine 2-epimerase VC0917 [imported] -; E=1e-106 pir:T44828; probable UDP-N-acetylglucosamine 2-epimerase (EC; E=1e-101 swissprot:P27828; WECB_ECOLI UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE; E=1e-101 COG: VC0917; COG0381 UDP-N-acetylglucosamine 2-epimerase; E=1e-107 PFAM: PF02350; UDP-N-acetylglucosamine 2-epimera; E=1.7e-162; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
       0.505
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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