STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9197Hypothetical protein. (40 aa)    
Predicted Functional Partners:
RB9198
Hypothetical protein.
       0.773
RB9196
Probable secreted glycosyl hydrolase; Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-05 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=1e-04.
       0.634
RB9195
Hypothetical protein-putative transmembrane protein.
       0.469
arsA-8
Arylsulphatase A; PMID: 7910580 PMID: 1572648 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=2e-27 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=2e-27 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=7e-27 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=9e-22 PFAM: PF00884; Sulfatase; E=1.5e-55.
       0.438
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.