STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mucDProbable MucD-putative a secreted serine proteinase; PMID: 11761711 PMID: 8606151 best DB hits: BLAST: gb:AAK01318.1; (AF190580) MucD [Pseudomonas syringae pv; E=0.010 gb:AAB01513.1; (U30799) MucD [Azotobacter vinelandii]; E=0.087 pir:F83550; serine proteinase MucD precursor PA0766 [imported] -; E=0.50 PFAM: PF00595; PDZ domain (Also known as DHR or; E=7.1e-05. (475 aa)    
Predicted Functional Partners:
nosR
Probable NosR regulatory protein; PMID: 20416234 best DB hits: BLAST: embl:CAB53350.1; (AJ010260) NosR protein [Paracoccus; E=0.001 gb:AAD09156.1; (AF047429) regulatory protein NosR [Achromobacter; E=0.001 embl:CAC03728.1; (AJ297529) RnfG protein [Pseudomonas stutzeri; E=0.094.
  
     0.737
RB7565
Hypothetical protein-putative transmembrane protein; PMID: 11743193.
  
     0.733
RB9572
Probable L-sorbosone dehydrogenase; PMID: 7574579 best DB hits: BLAST: pir:F75417; L-sorbosone dehydrogenase - Deinococcus radiodurans; E=8e-06 swissprot:Q44091; SNDH_ACELI L-SORBOSONE DEHYDROGENASE (SNDH); E=0.20 COG: DR1257; COG2133 Glucose/sorbosone dehydrogenases; E=8e-07 PFAM: PF01436; NHL repeat; E=0.028.
  
     0.726
RB3804
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.723
RB749
PMID: 9371463 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=5e-05 pir:JC4881; polyvinyl-alcohol dehydrogenase (acceptor) (EC; E=0.017 gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=0.076 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=4e-06 PFAM: PF01011; PQQ enzyme repeat; E=0.1 PF00993; Class II histocompatibility ant; E=0.47 PF01011; PQQ enzyme repeat; E=0.00012.
  
     0.722
RB8677
Best DB hits: BLAST: pir:S76850; hypothetical protein - Synechocystis sp. (strain PCC; E=0.56.
  
     0.713
RB3953
PMID: 9923682 best DB hits: BLAST: pir:B71970; cytochrome oxidase (cbb3-type) - Helicobacter pylori; E=2e-04 pir:C64538; cytochrome-c oxidase (EC 1.9.3.1) chain fixP -; E=0.003 ddbj:BAA33529.1; (AB018105) cb-type cytochrome c oxidase subunit; E=0.009 COG: jhp0135; COG2010 Cytochrome c, mono- and diheme variants; E=2e-05 PFAM: PF00034; Cytochrome c; E=0.00073.
  
 
   0.701
RB9002
Hypothetical protein-transmembrane prediction.
  
     0.701
RB4532
Similar to MchE protein; PMID: 12065505 best DB hits: BLAST: embl:CAC21493.1; (AJ278866) MchE protein [Escherichia coli]; E=0.37 swissprot:P22519; CVAA_ECOLI COLICIN V SECRETION PROTEIN CVAA; E=0.38 pir:E82263; conserved hypothetical protein VC0913 [imported] -; E=0.76 PFAM: PF02221; E1 family; E=0.88 PF00364; Biotin-requiring enzyme; E=0.0054.
  
     0.680
RB11463
Hypothetical protein; Best DB hits: PFAM: PF01011; PQQ enzyme repeat; E=0.39.
  
     0.678
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.