STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9228Hypothetical protein. (637 aa)    
Predicted Functional Partners:
RB492
Probable calmodulin; Best DB hits: BLAST: gb:AAD34246.1; AF084398_1 (AF084398) calmodulin mutant SYNCAM46; E=0.002 gb:AAD34433.1; AF084449_1 (AF084449) calmodulin mutant SYNCAM26; E=0.002 prf:1003191A; calmodulin [Oryctolagus cuniculus]; E=0.002 PFAM: PF00036; EF hand; E=0.034 PF00395; S-layer homology domain; E=0.44.
    
 0.875
RB2717
Conserved hypothetical protein-putative dual specificity phosphatase MKP-5; PMID: 10391943 best DB hits: BLAST: gb:AAD15447.1; (AC006068) unknown protein [Arabidopsis thaliana]; E=8e-21 gb:AAF56179.1; (AE003744) CG10371 gene product [Drosophila; E=3e-17 ddbj:BAB09879.1; (AB013392) contains similarity to unknown; E=4e-16 COG: PH1732; COG2453 Predicted protein-tyrosine phosphatase; E=3e-10 PFAM: PF00782; Dual specificity phosphatase, cataly; E=1.3e-08.
    
 0.853
RB5245
Hemolysin III; PMID: 7495855 best DB hits: BLAST: ddbj:BAB06584.1; (AP001516) hemolysin III [Bacillus halodurans]; E=1e-17 swissprot:P54176; HLY3_BACCE HEMOLYSIN III (HLY-III) -----; E=2e-16 swissprot:Q46827; YQFA_ECOLI HYPOTHETICAL 23.8 KD PROTEIN IN; E=2e-16 COG: BH2865; COG1272 Predicted membrane proteins, hemolysin III homologs; E=1e-18.
    
 0.758
RB10420
Hypothetical protein.
   
  0.756
RB4928
Probable aminopeptidase; PMID: 7934828 PMID: 1806041 PMID: 8665903 PMID: 2503378 best DB hits: BLAST: pir:G82759; hypothetical protein XF0820 [imported] - Xylella; E=5e-18 ddbj:BAA31158.1; (AB015725) aminopeptidase [Aeromonas caviae]; E=5e-11 ddbj:BAB07580.1; (AP001520) aminopeptidase [Bacillus halodurans]; E=1e-10 COG: XF0820; COG2234 Predicted aminopeptidases; E=5e-19 PFAM: PF02225; PA domain; E=0.0063 PF00595; PDZ domain (Also known as DHR o; E=1.1e-07.
   
 0.748
RB7452
Conserved hypothetical protein-containing SET domain; PMID: 98282232 best DB hits: BLAST: gb:AAF23370.1; (AF178219) MMSET type II [Homo sapiens]; E=5e-12 ddbj:BAA83042.1; (AB029013) KIAA1090 protein [Homo sapiens]; E=5e-12 gb:AAK00344.1; AF330040_1 (AF330040) IL-5 promoter; E=5e-12 COG: YHR119w; COG2940 Proteins containing SET domain; E=3e-06 PFAM: PF00856; SET domain; E=5.6e-16.
    
 0.745
rpoA-2
PMID: 9835038 best DB hits: BLAST: swissprot:O50634; RPOA_BACHD DNA-DIRECTED RNA POLYMERASE ALPHA; E=2e-09 swissprot:Q9Z3E7; RPOA_XANCP DNA-DIRECTED RNA POLYMERASE ALPHA; E=4e-09 gb:AAD00325.2; (U79735) RNA polymerase ALPHA subunit [Xanthomonas; E=4e-09 COG: BH0162; COG0202 DNA-directed RNA polymerase alpha subunit/40 kD; E=2e-10 PFAM: PF00515; TPR Domain; E=0.87 PF01000; Bacterial RNA polymerase, alpha; E=6.5e-12.
   
 0.743
RB13021
Conserved hypothetical protein-putative receptor protein kinase; PMID: 10731132 best DB hits: BLAST: gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=2e-07 gb:AAF44956.1; AE003406_161 (AE003416) symbol=BG:DS07108.4; E=1e-04 gb:AAF53475.1; (AE003648) BG:DS07108.4 gene product [Drosophila; E=1e-04.
    
 0.730
RB1376
Similar to adenylate cyclase regulatory protein; Best DB hits: BLAST: gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=0.004 ddbj:BAB21785.1; (AB051481) KIAA1694 protein [Homo sapiens]; E=0.061 embl:CAB95328.1; (AL359782) possible putative adenylate cyclase; E=0.096.
    
 0.730
RB2136
Hypothetical protein; Best DB hits: BLAST: gb:AAD26901.1; AC007267_1 (AC007267) putative leucine-rich repeat; E=0.011 gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=0.040 pir:T08903; hypothetical protein T32A16.10 - Arabidopsis thaliana; E=0.25.
    
 0.730
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.