STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9239Best DB hits: BLAST: pir:D70714; hypothetical protein Rv1513 - Mycobacterium tuberculosis; E=2e-04 pir:S73065; u0002kb protein - Mycobacterium tuberculosis -----; E=0.021 embl:CAA11577.1; (AJ223833) gsc [Mycobacterium avium subsp; E=0.080. (231 aa)    
Predicted Functional Partners:
RB9241
Best DB hits: BLAST: pir:E83602; hypothetical protein PA0343 [imported] - Pseudomonas; E=4e-07 pir:C82785; hypothetical protein XF0607 [imported] - Xylella; E=0.17 gb:AAF86398.1; AF235504_19 (AF235504) FkbM [Streptomyces; E=0.73.
       0.603
RB9237
Probable two-domain glycosyltransferase; PMID: 20127862 PMID: 10350455 best DB hits: BLAST: pir:B81318; probable two-domain glycosyltransferase Cj1135; E=1e-20 gb:AAF34140.1; (AF167344) glycosyltransferase [Campylobacter; E=2e-13 gb:AAG43975.1; AF215659_3 (AF215659) glycosyltransferase; E=2e-13 COG: Cj1135; COG0463 Glycosyltransferases involved in cell wall; E=1e-21 aq_1407; COG1215 Glycosyltransferases, probably involved in cell; E=0.010 PFAM: PF00535; Glycosyl transferase; E=2.8e-19.
  
    0.592
fucT2
Putative fucosyl transferase; PMID: 10377135 PMID: 99195826 PMID: 7721792 best DB hits: BLAST: pir:T44328; hypothetical protein wblA [imported] - Vibrio cholerae; E=7e-32 gb:AAD40713.1; AF048749_9 (AF048749) putative fucosyl transferase; E=1e-18 gb:AAD29863.1; (AF093828) alpha-1,2-fucosyltransferase; E=2e-18 PFAM: PF01531; Glycosyl transferase family 1; E=2.2e-16.
       0.580
noeI
Probable nodulation protein noeI-putative methyltransferase; PMID: 9163424 best DB hits: BLAST: swissprot:P55473; NOEI_RHISN NODULATION PROTEIN NOEI ----- gb:; E=0.004 gb:AAF67136.1; AF228683_3 (AF228683) nodulation protein NoeI; E=0.006 pir:S73065; u0002kb protein - Mycobacterium tuberculosis -----; E=0.014 COG: sll1456; COG0500 SAM-dependent methyltransferases; E=0.003.
 
     0.531
amsG
UDP-galactose-lipid carrier transferase; PMID: 7596293 best DB hits: BLAST: swissprot:Q57491; Y872_HAEIN HYPOTHETICAL SUGAR TRANSFERASE HI0872; E=3e-56 swissprot:Q46628; AMSG_ERWAM UDP-GALACTOSE-LIPID CARRIER; E=5e-56 pir:S61891; undecaprenyl-phosphate galactosephosphotransferase (EC; E=5e-56 COG: HI0872; COG2148 Sugar transferases involved in lipopolysaccharide; E=2e-57 PFAM: PF00895; ATP synthase protein 8; E=0.37 PF02397; Bacterial sugar transferase; E=3.6e-89.
  
  
 0.404
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.