STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9343Hypothetical protein. (59 aa)    
Predicted Functional Partners:
RB9342
Hypothetical protein.
       0.773
RB9344
Probable swi/snf family helicase 2; Best DB hits: BLAST: pir:D83545; probable helicase PA0799 [imported] - Pseudomonas; E=2e-96 embl:CAA67095.1; (X98455) SNF [Bacillus cereus]; E=8e-90 embl:CAB60181.1; (AL132824) putative helicase [Streptomyces; E=1e-86 COG: PA0799; COG0553 Superfamily II DNA/RNA helicases, SNF2 family; E=2e-97 PFAM: PF02561; Flagellar protein FliS; E=0.63 PF02156; Glycosyl hydrolase family 26; E=0.62 PF00176; SNF2 and others N-terminal dom; E=1.5e-71.
       0.757
cpcE
Similar to phycocyanin alpha phycocyanobilin lyase CpcE; PMID: 9882677 best DB hits: BLAST: pir:S74670; hypothetical protein sll1663 - Synechocystis sp. (strain; E=0.069 pir:D69108; phycocyanin alpha phycocyanobilin lyase CpcE -; E=0.20 pir:F83358; hypothetical protein PA2293 [imported] - Pseudomonas; E=0.35 COG: sll1663; COG1413 Phycocyanin alpha-subunit phycocyanobilin lyase and; E=0.007.
       0.572
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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