STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9356Hypothetical protein. (129 aa)    
Predicted Functional Partners:
RB1900
Probable NusG-like protein-putative transcription activator; PMID: 9919671 best DB hits: BLAST: embl:CAA09920.1; (AJ012097) NusG-like protein [Myxococcus; E=3e-05 pir:G82255; probable transcription activator RfaH VC0990 [imported]; E=4e-04 embl:CAA10615.1; (AJ132239) transcriptional activator [Erwinia; E=0.019 COG: VC0990; COG0250 Transcription antiterminator; E=3e-05.
  
     0.571
rtcB
Conserved hypothetical protein; PMID: 9738023 best DB hits: BLAST: pir:E72265; conserved hypothetical protein - Thermotoga maritima; E=1e-45 gb:AAB90372.1; (AE001044) conserved hypothetical protein; E=3e-43 pir:B69080; conserved hypothetical protein MTH1597 -; E=2e-40 COG: TM1357; COG1690 Uncharacterized ACR; E=1e-46 PFAM: PF01139; Uncharacterized protein family UPF00; E=3e-38 PF00367; phosphotransferase system, EIIB; E=0.44; Belongs to the RtcB family.
 
     0.523
RB5401
Hypothetical protein.
  
     0.475
RB10590
PMID: 10368134 best DB hits: BLAST: swissprot:P75920; MDOC_ECOLI GLUCANS BIOSYNTHESIS PROTEIN MDOC; E=2e-10 gb:AAG55793.1; AE005315_7 (AE005315) orf, hypothetical protein; E=2e-09 embl:CAB77037.1; (AJ245997) hypothetical protein [Xanthomonas; E=0.003 PFAM: PF00023; Ank repeat; E=1e-05.
  
     0.463
rtcA
RNA 3-terminal phosphate cyclase (RNA-3-phosphate cyclase); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
       0.453
dadA
PMID: 7906689 best DB hits: BLAST: pir:F82279; D-amino acid dehydrogenase, small chain VC0786; E=7e-43 pir:A81228; D-amino acid dehydrogenase, small chain NMB0176; E=1e-42 pir:C82001; D-amino-acid dehydrogenase (EC 1.4.99.1) small subunit; E=3e-40 COG: VC0786; COG0665 Glycine/D-amino acid oxidases (deaminating); E=6e-44 PFAM: PF01494; FAD binding domain; E=0.0014 PF02254; KTN NAD-binding domain; E=0.056 PF02032; Phytoene dehydrogenase related; E=0.013.
  
     0.424
RB2226
PMID: 7557402 best DB hits: BLAST: swissprot:Q00808; HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN; E=7e-18 swissprot:P49695; PKWA_THECU PUTATIVE SERINETHREONINE-PROTEIN; E=4e-13 gb:AAG40737.1; AF299085_1 (AF299085) Bap1 [Myxococcus xanthus]; E=2e-12 COG: slr0143_2; COG2319 WD40 repeat protein; E=2e-09 PFAM: PF00400; WD domain, G-beta repeat; E=0.2 PF01011; PQQ enzyme repeat; E=0.66 PF00400; WD domain, G-beta repeat; E=0.12.
  
     0.420
celP
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAB76936.1; (AJ275974) putative cellulosomal protein; E=6e-11 swissprot:Q45535; COTH_BACSU INNER SPORE COAT PROTEIN H -----; E=0.77.
  
     0.407
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.