STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9399Hypothetical protein-signal peptide and transmembrane prediction. (70 aa)    
Predicted Functional Partners:
miaB
Probable MiaB protein-putative tRNA-thiotransferase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.773
RB9390
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11823852 best DB hits: PFAM: PF00263; Bacterial type II and III secretion; E=0.68.
       0.618
RB9395
Probable membrane protein-putative transporter; Best DB hits: BLAST: swissprot:O54101; MMLB_STRCO PUTATIVE MEMBRANE PROTEIN SC10A5.10C; E=2e-29 swissprot:P96706; YDGH_BACSU PUTATIVE MEMBRANE PROTEIN YDGH; E=3e-17 swissprot:Q53902; MMLA_STRCO PUTATIVE MEMBRANE PROTEIN ACTII-3; E=1e-15 COG: BS_ydgH; COG2409 Predicted transporters; E=3e-18 AF0459; COG1033 Membrane proteins related to SecD/SecF; E=3e-07 BS_ydfJ; COG2409 Predicted transporters; E=3e-07.
       0.618
RB9402
Hypothetical zinc protease; PMID: 9634230 best DB hits: BLAST: pir:A75264; hypothetical protein - Deinococcus radiodurans (strain; E=2e-36 gb:AAF78805.1; (U33883) mitochondrial processing peptidase-like; E=1e-35 swissprot:O86835; YA12_STRCO HYPOTHETICAL ZINC PROTEASE SC9A10.02; E=7e-26 COG: DR2516; COG0612 Predicted Zn-dependent peptidases; E=2e-37.
       0.484
RB9404
Hypothetical zinc protease; Best DB hits: BLAST: swissprot:O33324; YR82_MYCTU HYPOTHETICAL ZINC PROTEASE RV2782C; E=3e-47 swissprot:O32965; YR82_MYCLE HYPOTHETICAL ZINC PROTEASE MLCB22.26C; E=7e-44 pir:H75263; probable zinc proteinase - Deinococcus radiodurans; E=9e-43 COG: Rv2782c; COG0612 Predicted Zn-dependent peptidases; E=3e-48 PFAM: PF00675; Insulinase (Peptidase family M1; E=4.8e-38; Belongs to the peptidase M16 family.
       0.484
RB9405
Hypothetical protein.
       0.484
RB9389
Hypothetical protein.
       0.454
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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