STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9448Best DB hits: BLAST: pir:C82978; conserved hypothetical protein PA5333 [imported] -; E=1e-12 pir:S74932; hypothetical protein slr0686 - Synechocystis sp. (strain; E=1e-08 COG: PA5333; COG3296 Uncharacterized BCR; E=1e-13. (115 aa)    
Predicted Functional Partners:
RB9450
Hypothetical protein.
       0.773
RB9447
Best DB hits: BLAST: pir:S75593; hypothetical protein slr1340 - Synechocystis sp. (strain; E=3e-27 swissprot:P08457; STA_STRLA STREPTOTHRICIN ACETYLTRANSFERASE; E=2e-05 pir:JN0662; nourseothricin acetyltransferase (EC 2.3.1.-) -; E=3e-04 COG: slr1340; COG0454 Histone acetyltransferase HPA2 and related; E=3e-28 MTH1284; COG0456 Acetyltransferases; E=0.001 AF0521; COG0454 Histone acetyltransferase HPA2 and related; E=0.001 PFAM: PF00583; Acetyltransferase (GNAT) family; E=1.7e-20.
       0.618
RB9445
Best DB hits: BLAST: embl:CAB89030.1; (AL353870) putative integral membrane protein; E=6e-17.
       0.512
RB5060
Conserved hypothetical protein; PMID: 9384377 best DB hits: BLAST: pir:E69772; hypothetical protein ydbS - Bacillus subtilis -----; E=7e-11 ddbj:BAB05439.1; (AP001512) BH1720~unknown conserved protein; E=6e-07 pir:T36081; probable integral membrane protein - Streptomyces; E=6e-06 COG: BS_ydbS; COG3402 Uncharacterized protein; E=7e-12.
  
    0.481
RB9720
Hypothetical protein.
  
     0.434
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.