STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9488Conserved hypothetical protein; PMID: 11549181 best DB hits: BLAST: gb:AAF82075.1; AF232751_3 (AF232751) unknown protein; E=1e-22 gb:AAB89642.1; (AE000991) conserved hypothetical protein; E=1e-10 gb:AAB89643.1; (AE000991) A. fulgidus predicted coding region; E=8e-05 COG: yeiH; COG2855 Uncharacterized membrane protein; E=2e-04 PFAM: PF00065; Neurotransmitter-gated ion-channel; E=0.36. (543 aa)    
Predicted Functional Partners:
RB9491
Hypothetical protein-signal peptide and transmembrane prediction.
       0.806
RB9486
Hypothetical 161 kDa transcriptional regulator; PMID: 8384293 best DB hits: BLAST: gb:AAB87745.1; (U89914) hypothetical 16.1 kDa transcriptional; E=8e-10 pir:G69867; transcription regulator MarR family homolog ykvE -; E=6e-06 pir:A82692; transcription regulator MarR family XF1354 [imported] -; E=1e-05 COG: BS_ykvE; COG1846 Transcriptional regulators; E=6e-07 PFAM: PF01047; MarR family; E=3.1e-20.
       0.572
RB9493
Best DB hits: BLAST: pir:G83613; probable acetyltransferase PA0249 [imported] -; E=7e-20 pir:S41381; hypothetical protein - Pseudomonas aeruginosa -----; E=5e-16 swissprot:P37664; YIAC_ECOLI HYPOTHETICAL 17.1 KDA PROTEIN IN; E=2e-13 COG: PA0249; COG0454 Histone acetyltransferase HPA2 and related; E=6e-21 Rv3420c; COG0456 Acetyltransferases; E=0.006 PFAM: PF00583; Acetyltransferase (GNAT) family; E=4.2e-21.
       0.522
RB12060
Hypothetical protein.
  
     0.449
RB9485
Hypothetical protein.
       0.434
RB9484
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAF87925.1; AF163841_2 (AF163841) unknown [Myxococcus xanthus]; E=9e-51 swissprot:Q50722; YY03_MYCTU HYPOTHETICAL 57.9 KDA PROTEIN RV3403C; E=0.031 PFAM: PF00070; Pyridine nucleotide-disulphide oxid; E=4.7e-05.
       0.402
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.