STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9506Best DB hits: BLAST: pir:D83262; hypothetical protein PA3075 [imported] - Pseudomonas; E=1e-18. (437 aa)    
Predicted Functional Partners:
RB9505
Best DB hits: BLAST: pir:D82493; conserved hypothetical protein VCA0171 [imported] -; E=4e-12 pir:C83262; hypothetical protein PA3074 [imported] - Pseudomonas; E=9e-06 pir:S74853; hypothetical protein sll0837 - Synechocystis sp. (strain; E=0.059 COG: VCA0171_2; COG0457 TPR-repeat-containing proteins; E=2e-10 PFAM: PF00515; TPR Domain; E=1.3e-05.
 
   0.955
RB9501
Hypothetical protein.
 
     0.953
RB9500
Best DB hits: BLAST: pir:H83261; hypothetical protein PA3071 [imported] - Pseudomonas; E=2e-35 pir:G82493; conserved hypothetical protein VCA0174 [imported] -; E=6e-30 pir:D83106; hypothetical protein PA4323 [imported] - Pseudomonas; E=1e-11 COG: PA3071; COG1721 Uncharacterized ACR; E=2e-36 PFAM: PF01882; Protein of unknown function DUF58; E=2.4e-18.
 
    0.947
RB9502
Best DB hits: BLAST: pir:E82493; conserved hypothetical protein VCA0172 [imported] -; E=7e-49 pir:B83262; hypothetical protein PA3073 [imported] - Pseudomonas; E=3e-44 gb:AAD30858.1; AF116251_1 (AF116251) BatA [Bacteroides fragilis]; E=6e-23 COG: VCA0172; COG3035 Uncharacterized BCR; E=7e-50.
 
     0.946
RB9504
Best DB hits: BLAST: pir:D82493; conserved hypothetical protein VCA0171 [imported] -; E=9e-11 pir:C83262; hypothetical protein PA3074 [imported] - Pseudomonas; E=4e-10 gb:AAD30859.1; AF116251_2 (AF116251) BatB [Bacteroides fragilis]; E=0.046 COG: VCA0171_1; COG3035 Uncharacterized BCR; E=2e-12.
 
     0.946
moxR-10
MoxR-related protein; PMID: 1657871 best DB hits: BLAST: pir:H82493; MoxR-related protein VCA0175 [imported] - Vibrio; E=1e-87 pir:G83261; conserved hypothetical protein PA3070 [imported] -; E=2e-87 pir:H70121; methanol dehydrogenase regulator (moxR) homolog - Lyme; E=3e-69 COG: VCA0175; COG0714 MoxR-like ATPases; E=9e-89 PFAM: PF01078; Magnesium chelatase, subunit Chl; E=6.9e-08.
 
     0.897
arsA-9
Arylsulfatase; PMID: 10336424 best DB hits: BLAST: gb:AAF04318.1; (AF065159) putative arylsulfatase [Bradyrhizobium; E=1e-59 gb:AAG58993.1; AE005611_3 (AE005611) arylsulfatase [Escherichia; E=5e-45 swissprot:P25549; ASLA_ECOLI ARYLSULFATASE (ARYL-SULFATE; E=5e-45 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=4e-46 yejM; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.001 PFAM: PF00884; Sulfatase; E=5.8e-75.
 
     0.845
aslA-4
Aryl-sulfate sulphohydrolase; PMID: 2476654 PMID: 2303452 PMID: 89384447 best DB hits: BLAST: gb:AAF04318.1; (AF065159) putative arylsulfatase [Bradyrhizobium; E=2e-50 gb:AAG58993.1; AE005611_3 (AE005611) arylsulfatase [Escherichia; E=4e-32 swissprot:P25549; ASLA_ECOLI ARYLSULFATASE (ARYL-SULFATE; E=6e-32 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=5e-33 PFAM: PF00884; Sulfatase; E=6.1e-68.
  
     0.660
RB6740
PMID: 9639599 best DB hits: BLAST: gb:AAC05180.1; (U74652) nonspecific acid phosphatase precursor; E=1e-105 PFAM: PF00702; haloacid dehalogenase-like hydr; E=0.0014.
  
     0.576
batA
BatA; PMID: 99232513 best DB hits: BLAST: gb:AAD30858.1; AF116251_1 (AF116251) BatA [Bacteroides fragilis]; E=3e-38 pir:E82493; conserved hypothetical protein VCA0172 [imported] -; E=8e-29 pir:B83262; hypothetical protein PA3073 [imported] - Pseudomonas; E=4e-23 COG: VCA0172; COG3035 Uncharacterized BCR; E=8e-30 PFAM: PF00092; von Willebrand factor type A do; E=0.00041.
 
     0.567
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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