STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9527Hypothetical protein-signal peptide and transmembrane prediction. (479 aa)    
Predicted Functional Partners:
RB9526
Conserved hypothetical protein-putative multidrug resistance efflux pump; Best DB hits: BLAST: pir:H82507; conserved hypothetical protein VCA0047 [imported] -; E=1e-42 swissprot:P32107; YIBH_ECOLI HYPOTHETICAL 42.0 KD PROTEIN IN; E=2e-27 swissprot:P37683; YIAV_ECOLI HYPOTHETICAL 41.8 KD PROTEIN IN; E=2e-23 COG: VCA0047; COG1566 Multidrug resistance efflux pump; E=1e-43 ybhG; COG0845 Membrane-fusion protein; E=2e-08 PA1237; COG1566 Multidrug resistance efflux pump; E=5e-08 PFAM: PF00529; HlyD family secretion protein; E=3.2e-10.
       0.655
RB9522
Conserved hypothetical protein; Best DB hits: BLAST: swissprot:P37684; YIAW_ECOLI HYPOTHETICAL 12.4 KD PROTEIN IN; E=0.006 swissprot:P32108; YIBI_ECOLI HYPOTHETICAL 13.9 KD PROTEIN IN; E=0.019 gb:AAG58742.1; AE005586_7 (AE005586) orf, hypothetical protein; E=0.019.
       0.443
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.