STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9581Probable cinnamoyl ester hydrolase-putative a transcriptional regulator; Best DB hits: BLAST: swissprot:P37486; YYBR_BACSU HYPOTHETICAL 14.7 KDA PROTEIN IN; E=3e-25 ddbj:BAA19363.1; (AB001488) FUNCTION UNKNOWN, SIMILAR PRODUCT IN; E=3e-25 swissprot:P96673; YDEP_BACSU HYPOTHETICAL 15.2 KDA PROTEIN IN; E=3e-25 COG: BS_yybR; COG1733 Predicted transcriptional regulators; E=3e-26 PFAM: PF01638; Protein of unknown function DUF24; E=1.9e-44. (128 aa)    
Predicted Functional Partners:
RB9584
Ripening-induced protein-putative Zn-containing oxidoreductase; Best DB hits: BLAST: embl:CAA04767.1; (AJ001445) ripening-induced protein [Fragaria; E=6e-31 pir:T10824; auxin-induced protein (clone MII-3) - mung bean -----; E=3e-29 swissprot:Q9ZUC1; QORL_ARATH QUINONE OXIDOREDUCTASE-LIKE PROTEIN; E=9e-27 COG: PA1137; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-24 PA5427; COG1064 Zn-dependent alcohol dehydrogenases; E=4e-10 VNG1821G; COG0604 NADPH:quinone reductase and related Zn-dependent; E=5e-10 PFAM: PF00107; Zinc-binding dehydrogenases; E=2.8e-68.
     
 0.537
RB9585
Bac_luciferase domain-containing protein; Best DB hits: BLAST: pir:E83496; hypothetical protein PA1186 [imported] - Pseudomonas; E=8e-50 embl:CAB76875.1; (AL159139) hypothetical protein SCL6.10; E=2e-12 swissprot:P71557; Y953_MYCTU HYPOTHETICAL 30.9 KDA PROTEIN RV0953C; E=7e-08 COG: PA1186; COG2141 Coenzyme F420-dependent N5,N10-methylene; E=8e-51 PFAM: PF00296; Bacterial luciferase; E=0.86.
  
    0.448
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.