STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9592Best DB hits: BLAST: pir:T36868; hypothetical protein SCI51.05c - Streptomyces coelicolor; E=6e-54 swissprot:Q60312; Y002_METJA HYPOTHETICAL PROTEIN MJ0002 -----; E=1e-13 pir:T36867; hypothetical protein SCI51.04 - Streptomyces coelicolor; E=9e-07. (269 aa)    
Predicted Functional Partners:
RB9591
Best DB hits: BLAST: pir:T36867; hypothetical protein SCI51.04 - Streptomyces coelicolor; E=3e-50 pir:T36868; hypothetical protein SCI51.05c - Streptomyces coelicolor; E=7e-07 pir:D83072; conserved hypothetical protein PA4584 [imported] -; E=2e-05.
    
0.867
butB
PMID: 7522196 best DB hits: BLAST: swissprot:P35824; SLAP_BACCI S-LAYER RELATED PROTEIN PRECURSOR; E=4e-04 PFAM: PF02368; Bacterial Ig-like domain (group 2; E=0.013.
       0.773
RB9598
Hypothetical protein.
       0.773
RB9588
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAB62700.1; (AL133422) hypothetical protein SCM1.42c; E=7e-34 gb:AAF12648.1; AE001826_117 (AE001826) hypothetical protein; E=4e-33.
 
     0.756
rtcA
RNA 3-terminal phosphate cyclase (RNA-3-phosphate cyclase); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
 
  
 0.714
RB4714
Conserved hypothetical protein; PMID: 97000351 best DB hits: BLAST: embl:CAB61595.1; (AL133210) hypothetical protein SCG11A.14; E=3e-96 gb:AAG57184.1; AE005439_3 (AE005439) orf, hypothetical protein; E=1e-69 swissprot:P33348; YEHL_ECOLI HYPOTHETICAL 42.4 KD PROTEIN IN; E=3e-69 COG: yehL; COG0714 MoxR-like ATPases; E=3e-70.
  
     0.651
RB4715
Best DB hits: BLAST: pir:T35548; hypothetical protein SC6G3.04 - Streptomyces coelicolor; E=1e-145 embl:CAB61596.1; (AL133210) hypothetical protein SCG11A.15; E=5e-93 swissprot:P33352; YEHP_ECOLI HYPOTHETICAL 42.1 KD PROTEIN IN; E=5e-27.
  
     0.621
RB5247
Putative WD-repeat containing protein; Best DB hits: BLAST: swissprot:Q00808; HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN; E=2e-25 swissprot:P49695; PKWA_THECU PUTATIVE SERINETHREONINE-PROTEIN; E=1e-21 embl:CAB45034.1; (AL078635) putative WD-repeat containing protein; E=1e-21 COG: sll0163; COG2319 WD40 repeat protein; E=4e-18 PFAM: PF00400; WD domain, G-beta repeat; E=3e-05.
  
     0.555
RB9664
PMID: 8830057 best DB hits: BLAST: gb:AAD05198.1; (U43163) inter-alpha-trypsin inhibitor family; E=3e-24 ddbj:BAA07602.1; (D38595) inter-alpha-trypsin inhibitor family; E=4e-24 ddbj:BAA07536.1; (D38535) PK-120 precursor [Homo sapiens]; E=8e-24 COG: sll0103; COG2304 Protein containing von Willebrand factor (vWF) type; E=1e-04 PFAM: PF02138; Beige/BEACH domain; E=0.089 PF00092; von Willebrand factor type A domain; E=0.084.
 
     0.517
RB6107
Conserved hypothetical protein; PMID: 10710307 best DB hits: BLAST: pir:B81207; hypothetical protein NMB0372 [imported] - Neisseria; E=0.016 pir:A81174; hypothetical protein NMB0655 [imported] - Neisseria; E=0.022 pir:B81783; hypothetical protein NMA2115 [imported] - Neisseria; E=0.070.
  
     0.508
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.