STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9606Cytoskeleton assembly control protein SLA1-secreted or membrane associated protein; PMID: 8335689 best DB hits: BLAST: embl:CAA84826.1; (Z35768) ORF YBL007c [Saccharomyces cerevisiae]; E=0.67. (613 aa)    
Predicted Functional Partners:
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
  
    0.662
RB9600
Best DB hits: BLAST: pir:A75582; serine proteinase, subtilase family - Deinococcus; E=0.064 COG: DRA0283; COG1404 Subtilisin-like serine proteases; E=0.006.
       0.500
RB9604
Vegetatible incompatibility protein HET-E1; PMID: 7557402 best DB hits: BLAST: swissprot:Q00808; HET1_PODAN VEGETATIBLE INCOMPATIBILITY PROTEIN; E=3e-21 pir:T41075; hypothetical WD-repeat protein - fission yeast; E=9e-17 embl:CAA04998.1; (AJ001774) vanadium chloroperoxidase [Anabaena; E=2e-16 COG: YCR084c; COG2319 WD40 repeat protein; E=9e-14 PFAM: PF00400; WD domain, G-beta repeat; E=0.058.
       0.500
acrA1
Probable acrA1 protein; Best DB hits: BLAST: pir:F70974; probable acrA1 protein - Mycobacterium tuberculosis; E=4e-15 gb:AAG31130.1; AF299336_7 (AF299336) MxcG [Stigmatella aurantiaca]; E=6e-12 pir:T37054; hypothetical protein SCJ21.05 - Streptomyces coelicolor; E=7e-10 COG: Rv3391_1; COG0451 Nucleoside-diphosphate-sugar epimerases; E=4e-16 PA4078_2; COG3320 Epimerase domains of multifunctional non-ribosomal; E=2e-04 PFAM: PF01073; 3-beta hydroxysteroid dehydro; E=0.7.
       0.478
RB2605
Similar to azurin precursor; PMID: 2116366 best DB hits: BLAST: pdb:2AZA; A Chain A, Azurin (Oxidized) ----- pdb: 2AZA B Chain; E=0.012 swissprot:P34097; AZUR_PSEPU AZURIN ----- pir: A37338 azurin -; E=0.024 pdb:1NZR; A Chain A, Azurin Mutant With Trp 48 Replaced By Met; E=0.033 COG: PA4922; COG3241 Azurin; E=0.008 PFAM: PF00127; Copper binding proteins, plasto; E=5e-06 PF00034; Cytochrome c; E=0.0036.
  
 
 0.453
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.