STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtfBPMID: 8162191 PMID: 7536735 best DB hits: BLAST: pir:I76776; Mannosyltransferase (EC 5.-.-.-) B - Escherichia coli; E=2e-26 gb:AAF04384.1; AF189151_7 (AF189151) WbdB; mannosyl transferase B; E=2e-26 gb:AAC38771.1; (AF010182) glycosyltransferase WbpY [Pseudomonas; E=3e-21 COG: PA5448; COG0438 Predicted glycosyltransferases; E=3e-22 PFAM: PF00534; Glycosyl transferases group 1; E=2.1e-24. (398 aa)    
Predicted Functional Partners:
RB10436
Mannosyl transferase; PMID: 10978535 best DB hits: BLAST: pir:S22620; hypothetical protein 18.9 - Salmonella choleraesuis; E=7e-55 ddbj:BAB03210.1; (AB046360) putative glycosyltransferase; E=4e-53 ddbj:BAA94399.1; (AB041266) mannosyl transferase [Actinobacillus; E=2e-52 COG: DRA0040; COG0438 Predicted glycosyltransferases; E=1e-50 PFAM: PF00534; Glycosyl transferases group 1; E=2.4e-29.
  
     0.740
sur1
Similar to surface protein Sur1; Best DB hits: BLAST: swissprot:Q10323; YD6B_SCHPO HYPOTHETICAL 42.2 KD PROTEIN; E=1e-28 pir:T38533; similar to S. cerevisiae sur1 protein - fission yeast; E=4e-27 gb:AAB68308.1; (U39205) Sur1p [Saccharomyces cerevisiae]; E=8e-26.
  
    0.734
RB9613
Hypothetical protein.
       0.695
mtfA
Probable mannosyltransferase A (mtfA); Best DB hits: BLAST: pir:S74764; hypothetical protein slr1063 - Synechocystis sp. (strain; E=2e-10 gb:AAB91182.1; (AE001103) mannosyltransferase A (mtfA); E=3e-10 pir:S77338; LPS glycosyltransferase icsA - Synechocystis sp. (strain; E=0.004 COG: AF0045; COG0438 Predicted glycosyltransferases; E=3e-11 PFAM: PF00534; Glycosyl transferases group 1; E=9.2e-10.
     0.650
macB
ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
       0.642
syrD
PMID: 8231810 best DB hits: BLAST: swissprot:P33951; SYRD_PSESY ATP-BINDING PROTEIN SYRD -----; E=8e-65 pir:G83345; pyoverdine biosynthesis protein PvdE PA2397 [imported] -; E=8e-65 pir:S54001; pyoverdine synthetase E - Pseudomonas aeruginosa -----; E=9e-64 COG: PA2397; COG1132 ABC-type multidrug/protein/lipid transport system,; E=8e-66 APE1253; COG1136 ABC-type (unclassified) transport system, ATPase; E=2e-09 XF1081; COG1132 ABC-type multidrug/protein/lipid transport system,; E=2e-07 PFAM: PF00664; ABC transporter transmembrane; E=0.25 PF00470; RecF protein; E=0.13 PF02223; Thymidylat [...]
       0.642
RB9623
Best DB hits: BLAST: embl:CAA69119.1; (Y07786) sugar transferase [Vibrio cholerae]; E=3e-13 ddbj:BAA33603.1; (AB012956) probable glycosyl transferase [Vibrio; E=3e-13 pir:T44330; glycosyl transferase homolog [imported] - Vibrio; E=3e-12 COG: BH3661; COG0463 Glycosyltransferases involved in cell wall; E=7e-13 RP339; COG0463 Glycosyltransferases involved in cell wall biogenesis; E=5e-10 HI0868; COG0463 Glycosyltransferases involved in cell wall; E=4e-09 PFAM: PF00535; Glycosyl transferase; E=1.9e-44.
 
    0.602
RB9620
Hypothetical protein.
  
    0.553
RB9619
Hypothetical protein.
       0.536
RB9624
Hypothetical protein.
       0.536
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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