STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9648Probable ceramide glucosyltransferase; Best DB hits: BLAST: embl:CAC11705.1; (AL445064) hypothetical protein [Thermoplasma; E=9e-09 pir:S75560; ceramide glucosyltransferase - Synechocystis sp. (strain; E=3e-08 ddbj:BAA09451.1; (D50840) ceramide glucosyltransferase [Homo; E=7e-05 COG: Ta0565; COG1215 Glycosyltransferases, probably involved in cell wall; E=8e-10 slr0813; COG1215 Glycosyltransferases, probably involved in cell; E=3e-09 sll1004; COG0463 Glycosyltransferases involved in cell wall; E=4e-05 PFAM: PF00535; Glycosyl transferase; E=2e-07. (410 aa)    
Predicted Functional Partners:
RB10939
Conserved hypothetical protein-putative transcriptional regulator; PMID: 10567266 best DB hits: BLAST: pir:H75351; conserved hypothetical protein - Deinococcus radiodurans; E=3e-06 gb:AAG20306.1; (AE005104) Vng2170h [Halobacterium sp. NRC-1]; E=0.81 COG: DR1804; COG1396 Predicted transcriptional regulators; E=3e-07.
  
     0.575
RB6221
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11759840.
 
     0.536
RB12316
Similar to chitooligosaccharide deacetylase; Best DB hits: BLAST: pir:A70081; conserved hypothetical protein yxkH - Bacillus subtilis; E=0.24 gb:AAK00156.1; AF222753_11 (AF222753) nodulation; E=0.50 pir:T50960; related to nodulation protein nodB [imported] -; E=0.69 PFAM: PF01522; Polysaccharide deacetylase; E=0.0074.
  
  
 0.491
RB12602
Similar to chitooligosaccharide deacetylase; Best DB hits: BLAST: pir:T35588; probable secreted protein - Streptomyces coelicolor; E=0.24 ddbj:BAB05636.1; (AP001513) chitooligosaccharide deacetylase; E=0.63 PFAM: PF01522; Polysaccharide deacetylase; E=0.00027.
  
  
 0.491
RB2091
PMID: 10086841 best DB hits: BLAST: ddbj:BAB05636.1; (AP001513) chitooligosaccharide deacetylase; E=0.003 ddbj:BAB05021.1; (AP001511) BH1302~unknown conserved protein; E=0.004 pir:A70081; conserved hypothetical protein yxkH - Bacillus subtilis; E=0.004 COG: BH1917; COG0726 Predicted xylanase/chitin deacetylase; E=3e-04 PFAM: PF01522; Polysaccharide deacetylase; E=0.055.
  
  
 0.491
RB3593
PMID: 9384377 best DB hits: BLAST: pir:G69849; endo-1,4-beta-xylanase homolog yjeA - Bacillus subtilis; E=6e-04 pir:A70081; conserved hypothetical protein yxkH - Bacillus subtilis; E=0.001 pir:A75376; probable oligosaccharide deacetylase - Deinococcus; E=0.003 COG: BS_yjeA_2; COG0726 Predicted xylanase/chitin deacetylase; E=6e-05 PFAM: PF01522; Polysaccharide deacetylase; E=0.0029.
  
  
 0.491
RB7144
Probable predicted xylanase/chitin deacetylase; PMID: 9384377 best DB hits: BLAST: pir:A70081; conserved hypothetical protein yxkH - Bacillus subtilis; E=2e-10 pir:A82350; conserved hypothetical protein VC0239 [imported] -; E=6e-09 pir:D82751; conserved hypothetical protein XF0878 [imported] -; E=2e-08 COG: BS_yxkH; COG0726 Predicted xylanase/chitin deacetylase; E=2e-11 PFAM: PF01522; Polysaccharide deacetylase; E=0.036.
  
  
 0.491
RB3312
Conserved hypothetical protein-putative ketopantoate reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
  
     0.482
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
  
 
 0.481
aprF
Similar to AprF-putative outer membrane efflux protein or secreted alkaline phosphatase; PMID: 11222613 best DB hits: BLAST: gb:AAF87592.1; AF286062_5 (AF286062) AprF [Pseudomonas; E=0.29 gb:AAF01330.1; (AF188365) outer membrane protein [Pseudomonas; E=0.64 PFAM: PF02321; Outer membrane efflux protein; E=2.3e-05.
 
   
 0.480
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.