STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9670Best DB hits: BLAST: pir:E81971; hypothetical protein NMA0532 [imported] - Neisseria; E=0.079 pir:G81862; conserved hypothetical protein NMA1675 [imported] -; E=0.079 pir:F81882; hypothetical protein NMA1155 [imported] - Neisseria; E=0.17. (238 aa)    
Predicted Functional Partners:
RB2557
Hypothetical protein.
  
     0.705
RB9669
Hypothetical protein.
       0.701
RB9668
Hypothetical protein.
       0.645
RB5346
Probable transposase; PMID: 8253675 best DB hits: BLAST: pir:E75550; probable transposase - Deinococcus radiodurans (strain; E=6e-06 pir:F64571; hypothetical protein SARA17 - Helicobacter pylori; E=3e-05 gb:AAG59402.1; AE005653_3 (AE005653) putative transposase; E=6e-05 COG: DR0177; COG1943 Predicted transposase; E=5e-07 PFAM: PF01797; Transposase IS200 like; E=7.8e-08.
  
     0.622
RB8999
Conserved hypothetical protein-putative transmembrane protein; PMID: 11214968.
  
     0.546
RB11312
Hypothetical protein.
  
     0.542
RB9673
Hypothetical protein.
       0.537
pepX
PMID: 7765315 best DB hits: BLAST: pir:T46737; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) [imported] -; E=2e-71 gb:AAB50275.1; (U22900) PepX [Lactobacillus helveticus]; E=1e-60 swissprot:P40334; PEPX_LACDL XAA-PRO DIPEPTIDYL-PEPTIDASE (X-PRO; E=3e-60 COG: Rv1215c; COG2936 Predicted acyl esterases; E=4e-05 PFAM: PF02129; X-Pro dipeptidyl-peptidase (S15; E=2.3e-13.
       0.537
RB5811
Conserved hypothetical protein; PMID: 11058132 best DB hits: BLAST: ddbj:BAB04428.1; (AP001509) BH0709~unknown conserved protein in; E=9e-05 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=0.53.
  
     0.529
RB6448
Similar to En/Spm-like transposon protein; PMID: 10617197 best DB hits: BLAST: gb:AAD03363.1; (AC005957) EnSpm-like transposon protein; E=0.89.
  
     0.524
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.