Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RB10276 | RB736 | RB10276 | RB736 | Hypothetical protein-transmembrane prediction. | Conserved hypothetical protein-putative rhamnosidase; PMID: 10632887 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-04 embl:CAB53341.1; (AJ238748) alfa-L-rhamnosidase [Clostridium; E=0.019. | 0.489 |
RB10276 | pepX | RB10276 | RB9674 | Hypothetical protein-transmembrane prediction. | PMID: 7765315 best DB hits: BLAST: pir:T46737; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) [imported] -; E=2e-71 gb:AAB50275.1; (U22900) PepX [Lactobacillus helveticus]; E=1e-60 swissprot:P40334; PEPX_LACDL XAA-PRO DIPEPTIDYL-PEPTIDASE (X-PRO; E=3e-60 COG: Rv1215c; COG2936 Predicted acyl esterases; E=4e-05 PFAM: PF02129; X-Pro dipeptidyl-peptidase (S15; E=2.3e-13. | 0.580 |
RB6865 | pepX | RB6865 | RB9674 | Hypothetical protein. | PMID: 7765315 best DB hits: BLAST: pir:T46737; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) [imported] -; E=2e-71 gb:AAB50275.1; (U22900) PepX [Lactobacillus helveticus]; E=1e-60 swissprot:P40334; PEPX_LACDL XAA-PRO DIPEPTIDYL-PEPTIDASE (X-PRO; E=3e-60 COG: Rv1215c; COG2936 Predicted acyl esterases; E=4e-05 PFAM: PF02129; X-Pro dipeptidyl-peptidase (S15; E=2.3e-13. | 0.460 |
RB736 | RB10276 | RB736 | RB10276 | Conserved hypothetical protein-putative rhamnosidase; PMID: 10632887 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-04 embl:CAB53341.1; (AJ238748) alfa-L-rhamnosidase [Clostridium; E=0.019. | Hypothetical protein-transmembrane prediction. | 0.489 |
RB736 | pepX | RB736 | RB9674 | Conserved hypothetical protein-putative rhamnosidase; PMID: 10632887 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-04 embl:CAB53341.1; (AJ238748) alfa-L-rhamnosidase [Clostridium; E=0.019. | PMID: 7765315 best DB hits: BLAST: pir:T46737; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) [imported] -; E=2e-71 gb:AAB50275.1; (U22900) PepX [Lactobacillus helveticus]; E=1e-60 swissprot:P40334; PEPX_LACDL XAA-PRO DIPEPTIDYL-PEPTIDASE (X-PRO; E=3e-60 COG: Rv1215c; COG2936 Predicted acyl esterases; E=4e-05 PFAM: PF02129; X-Pro dipeptidyl-peptidase (S15; E=2.3e-13. | 0.409 |
RB9668 | RB9669 | RB9668 | RB9669 | Hypothetical protein. | Hypothetical protein. | 0.709 |
RB9668 | RB9670 | RB9668 | RB9670 | Hypothetical protein. | Best DB hits: BLAST: pir:E81971; hypothetical protein NMA0532 [imported] - Neisseria; E=0.079 pir:G81862; conserved hypothetical protein NMA1675 [imported] -; E=0.079 pir:F81882; hypothetical protein NMA1155 [imported] - Neisseria; E=0.17. | 0.645 |
RB9668 | RB9673 | RB9668 | RB9673 | Hypothetical protein. | Hypothetical protein. | 0.456 |
RB9668 | pepX | RB9668 | RB9674 | Hypothetical protein. | PMID: 7765315 best DB hits: BLAST: pir:T46737; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) [imported] -; E=2e-71 gb:AAB50275.1; (U22900) PepX [Lactobacillus helveticus]; E=1e-60 swissprot:P40334; PEPX_LACDL XAA-PRO DIPEPTIDYL-PEPTIDASE (X-PRO; E=3e-60 COG: Rv1215c; COG2936 Predicted acyl esterases; E=4e-05 PFAM: PF02129; X-Pro dipeptidyl-peptidase (S15; E=2.3e-13. | 0.456 |
RB9669 | RB9668 | RB9669 | RB9668 | Hypothetical protein. | Hypothetical protein. | 0.709 |
RB9669 | RB9670 | RB9669 | RB9670 | Hypothetical protein. | Best DB hits: BLAST: pir:E81971; hypothetical protein NMA0532 [imported] - Neisseria; E=0.079 pir:G81862; conserved hypothetical protein NMA1675 [imported] -; E=0.079 pir:F81882; hypothetical protein NMA1155 [imported] - Neisseria; E=0.17. | 0.701 |
RB9669 | RB9673 | RB9669 | RB9673 | Hypothetical protein. | Hypothetical protein. | 0.492 |
RB9669 | pepX | RB9669 | RB9674 | Hypothetical protein. | PMID: 7765315 best DB hits: BLAST: pir:T46737; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) [imported] -; E=2e-71 gb:AAB50275.1; (U22900) PepX [Lactobacillus helveticus]; E=1e-60 swissprot:P40334; PEPX_LACDL XAA-PRO DIPEPTIDYL-PEPTIDASE (X-PRO; E=3e-60 COG: Rv1215c; COG2936 Predicted acyl esterases; E=4e-05 PFAM: PF02129; X-Pro dipeptidyl-peptidase (S15; E=2.3e-13. | 0.492 |
RB9670 | RB9668 | RB9670 | RB9668 | Best DB hits: BLAST: pir:E81971; hypothetical protein NMA0532 [imported] - Neisseria; E=0.079 pir:G81862; conserved hypothetical protein NMA1675 [imported] -; E=0.079 pir:F81882; hypothetical protein NMA1155 [imported] - Neisseria; E=0.17. | Hypothetical protein. | 0.645 |
RB9670 | RB9669 | RB9670 | RB9669 | Best DB hits: BLAST: pir:E81971; hypothetical protein NMA0532 [imported] - Neisseria; E=0.079 pir:G81862; conserved hypothetical protein NMA1675 [imported] -; E=0.079 pir:F81882; hypothetical protein NMA1155 [imported] - Neisseria; E=0.17. | Hypothetical protein. | 0.701 |
RB9670 | RB9673 | RB9670 | RB9673 | Best DB hits: BLAST: pir:E81971; hypothetical protein NMA0532 [imported] - Neisseria; E=0.079 pir:G81862; conserved hypothetical protein NMA1675 [imported] -; E=0.079 pir:F81882; hypothetical protein NMA1155 [imported] - Neisseria; E=0.17. | Hypothetical protein. | 0.537 |
RB9670 | pepX | RB9670 | RB9674 | Best DB hits: BLAST: pir:E81971; hypothetical protein NMA0532 [imported] - Neisseria; E=0.079 pir:G81862; conserved hypothetical protein NMA1675 [imported] -; E=0.079 pir:F81882; hypothetical protein NMA1155 [imported] - Neisseria; E=0.17. | PMID: 7765315 best DB hits: BLAST: pir:T46737; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) [imported] -; E=2e-71 gb:AAB50275.1; (U22900) PepX [Lactobacillus helveticus]; E=1e-60 swissprot:P40334; PEPX_LACDL XAA-PRO DIPEPTIDYL-PEPTIDASE (X-PRO; E=3e-60 COG: Rv1215c; COG2936 Predicted acyl esterases; E=4e-05 PFAM: PF02129; X-Pro dipeptidyl-peptidase (S15; E=2.3e-13. | 0.537 |
RB9673 | RB9668 | RB9673 | RB9668 | Hypothetical protein. | Hypothetical protein. | 0.456 |
RB9673 | RB9669 | RB9673 | RB9669 | Hypothetical protein. | Hypothetical protein. | 0.492 |
RB9673 | RB9670 | RB9673 | RB9670 | Hypothetical protein. | Best DB hits: BLAST: pir:E81971; hypothetical protein NMA0532 [imported] - Neisseria; E=0.079 pir:G81862; conserved hypothetical protein NMA1675 [imported] -; E=0.079 pir:F81882; hypothetical protein NMA1155 [imported] - Neisseria; E=0.17. | 0.537 |
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