STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepXPMID: 7765315 best DB hits: BLAST: pir:T46737; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) [imported] -; E=2e-71 gb:AAB50275.1; (U22900) PepX [Lactobacillus helveticus]; E=1e-60 swissprot:P40334; PEPX_LACDL XAA-PRO DIPEPTIDYL-PEPTIDASE (X-PRO; E=3e-60 COG: Rv1215c; COG2936 Predicted acyl esterases; E=4e-05 PFAM: PF02129; X-Pro dipeptidyl-peptidase (S15; E=2.3e-13. (626 aa)    
Predicted Functional Partners:
RB9673
Hypothetical protein.
       0.773
RB10276
Hypothetical protein-transmembrane prediction.
  
     0.580
RB9670
Best DB hits: BLAST: pir:E81971; hypothetical protein NMA0532 [imported] - Neisseria; E=0.079 pir:G81862; conserved hypothetical protein NMA1675 [imported] -; E=0.079 pir:F81882; hypothetical protein NMA1155 [imported] - Neisseria; E=0.17.
       0.537
RB9669
Hypothetical protein.
       0.492
RB6865
Hypothetical protein.
  
     0.460
RB9668
Hypothetical protein.
       0.456
RB736
Conserved hypothetical protein-putative rhamnosidase; PMID: 10632887 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-04 embl:CAB53341.1; (AJ238748) alfa-L-rhamnosidase [Clostridium; E=0.019.
  
     0.409
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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