STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9692Best DB hits: BLAST: pir:A83349; hypothetical protein PA2367 [imported] - Pseudomonas; E=9e-13 gb:AAB92575.1; (AF037441) putative 17.8 kDa protein [Edwardsiella; E=0.006 COG: PA2367; COG3157 Hemolysin-coregulated protein (uncharacterized); E=9e-14. (159 aa)    
Predicted Functional Partners:
RB9690
Best DB hits: BLAST: pir:A83635; conserved hypothetical protein PA0084 [imported] -; E=0.0 gb:AAB92576.1; (AF037441) putative 54.5 kDa protein [Edwardsiella; E=1e-110 pir:B83351; conserved hypothetical protein PA2366 [imported] -; E=1e-109.
 
 
 0.992
RB9689
Best DB hits: BLAST: pir:H83634; conserved hypothetical protein PA0083 [imported] -; E=2e-54 gb:AAB92577.1; (AF037441) putative 19.5 kDa protein [Edwardsiella; E=7e-29 pir:A83351; conserved hypothetical protein PA2365 [imported] -; E=8e-28.
 
 
 0.990
RB9693
Best DB hits: BLAST: pir:D83635; hypothetical protein PA0087 [imported] - Pseudomonas; E=6e-06 gb:AAB92574.1; (AF037441) putative 18.8 kDa protein [Edwardsiella; E=1e-04.
 
  
 0.951
RB9699
Best DB hits: BLAST: pir:H83635; conserved hypothetical protein PA0091 [imported] -; E=1e-104 pir:D83633; conserved hypothetical protein PA0095 [imported] -; E=1e-101 pir:G83310; conserved hypothetical protein PA2685 [imported] -; E=5e-97.
 
  
 0.911
RB9696
Best DB hits: BLAST: pir:E83635; hypothetical protein PA0088 [imported] - Pseudomonas; E=1e-139 pir:C83349; hypothetical protein PA2369 [imported] - Pseudomonas; E=2e-61 pir:A82499; hypothetical protein VCA0110 [imported] - Vibrio; E=3e-40.
 
  
 0.910
RB9687
Best DB hits: BLAST: pir:G83634; hypothetical protein PA0082 [imported] - Pseudomonas; E=1e-34 pir:D83350; hypothetical protein PA2360 [imported] - Pseudomonas; E=3e-10.
 
  
 0.900
RB9698
Best DB hits: BLAST: pir:F83635; hypothetical protein PA0089 [imported] - Pseudomonas; E=4e-31 pir:D83349; hypothetical protein PA2370 [imported] - Pseudomonas; E=1e-05 gb:AAG54528.1; AE005198_9 (AE005198) Z0259 gene product; E=0.001.
 
  
 0.897
RB9679
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG54525.1; AE005198_6 (AE005198) Z0256 gene product; E=2e-16 pir:D83634; hypothetical protein PA0079 [imported] - Pseudomonas; E=3e-16 pir:E82499; hypothetical protein VCA0114 [imported] - Vibrio; E=2e-14.
 
  
 0.879
RB9684
Best DB hits: BLAST: pir:F83350; hypothetical protein PA2362 [imported] - Pseudomonas; E=3e-05 pir:G83437; hypothetical protein PA1668 [imported] - Pseudomonas; E=0.006.
 
  
 0.669
RB9702
Best DB hits: BLAST: pir:H83542; hypothetical protein PA0824 [imported] - Pseudomonas; E=0.042 pir:F82478; hypothetical protein VCA0284 [imported] - Vibrio; E=0.18 gb:AAG54900.1; AE005236_1 (AE005236) Z0705 gene product; E=0.36.
 
   
 0.559
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.