STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9797Hypothetical protein. (103 aa)    
Predicted Functional Partners:
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.623
glnB-4
Nitrogen regulatory protein P-II; PMID: 7590157 PMID: 9733647 best DB hits: BLAST: swissprot:Q10960; GLNB_MYCTU NITROGEN REGULATORY PROTEIN P-II; E=5e-16 swissprot:O30794; GLNB_NOSPU NITROGEN REGULATORY PROTEIN P-II (PII; E=4e-15 swissprot:P80016; GLNB_SYNP7 NITROGEN REGULATORY PROTEIN P-II (PII; E=5e-15 COG: Rv2919c; COG0347 Nitrogen regulatory protein PII; E=5e-17 PFAM: PF00543; Nitrogen regulatory protein P-II; E=1.2e-10.
       0.547
RB9798
Hypothetical protein.
       0.463
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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