Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplC | rplI | RB7833 | RB9916 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.995 |
| rplC | rplQ | RB7833 | RB12628 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Probable 50S ribosomal protein L17; PMID: 2989779 PMID: 10094780 best DB hits: BLAST: swissprot:Q9Z9H5; RL17_THETH 50S RIBOSOMAL PROTEIN L17 -----; E=7e-11 pir:B75313; ribosomal protein L17 - Deinococcus radiodurans (strain; E=3e-09 swissprot:Q9ZCT0; RL17_RICPR 50S RIBOSOMAL PROTEIN L17 -----; E=3e-09 COG: DR2129; COG0203 Ribosomal protein L17; E=2e-10 PFAM: PF01196; Ribosomal protein L17; E=4.2e-06. | 0.996 |
| rplC | rplV | RB7833 | RB7839 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.999 |
| rplC | rplW | RB7833 | RB7836 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
| rplC | rplX | RB7833 | RB7851 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Probable 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.998 |
| rplC | rpsD | RB7833 | RB1233 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.994 |
| rplC | rpsI | RB7833 | RB10469 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 30S ribosomal protein S9; PMID: 3884974 PMID: 1091515 best DB hits: BLAST: swissprot:P02363; RS9_ECOLI 30S RIBOSOMAL PROTEIN S9 -----; E=1e-22 gb:AAK02605.1; (AE006087) RpS9 [Pasteurella multocida]; E=5e-22 pir:C82308; ribosomal protein S9 VC0571 [imported] - Vibrio cholerae; E=2e-21 COG: rpsI; COG0103 Ribosomal protein S9; E=1e-23 PFAM: PF00380; Ribosomal protein S9/S16; E=7.2e-51; Belongs to the universal ribosomal protein uS9 family. | 0.996 |
| rplC | rpsK | RB7833 | RB12625 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.997 |
| rplC | rpsS | RB7833 | RB7838 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
| rplC | rspB | RB7833 | RB10638 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S2; PMID: 6806564 PMID: 6272196 PMID: 7023985 PMID: 10094780 best DB hits: BLAST: pir:F75386; ribosomal protein S2 - Deinococcus radiodurans (strain; E=9e-52 swissprot:Q9WZM1; RS2_THEMA 30S RIBOSOMAL PROTEIN S2 -----; E=2e-51 pdb:1FJF; B Chain B, Structure Of The Thermus Thermophilus 30s; E=2e-50 COG: DR1513; COG0052 Ribosomal protein S2; E=8e-53 PFAM: PF00318; Ribosomal protein S2; E=1.2e-82; Belongs to the universal ribosomal protein uS2 family. | 0.995 |
| rplI | rplC | RB9916 | RB7833 | Ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.995 |
| rplI | rplQ | RB9916 | RB12628 | Ribosomal protein L9; Binds to the 23S rRNA. | Probable 50S ribosomal protein L17; PMID: 2989779 PMID: 10094780 best DB hits: BLAST: swissprot:Q9Z9H5; RL17_THETH 50S RIBOSOMAL PROTEIN L17 -----; E=7e-11 pir:B75313; ribosomal protein L17 - Deinococcus radiodurans (strain; E=3e-09 swissprot:Q9ZCT0; RL17_RICPR 50S RIBOSOMAL PROTEIN L17 -----; E=3e-09 COG: DR2129; COG0203 Ribosomal protein L17; E=2e-10 PFAM: PF01196; Ribosomal protein L17; E=4.2e-06. | 0.996 |
| rplI | rplV | RB9916 | RB7839 | Ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.995 |
| rplI | rplW | RB9916 | RB7836 | Ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.995 |
| rplI | rplX | RB9916 | RB7851 | Ribosomal protein L9; Binds to the 23S rRNA. | Probable 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.994 |
| rplI | rpsD | RB9916 | RB1233 | Ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.993 |
| rplI | rpsI | RB9916 | RB10469 | Ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S9; PMID: 3884974 PMID: 1091515 best DB hits: BLAST: swissprot:P02363; RS9_ECOLI 30S RIBOSOMAL PROTEIN S9 -----; E=1e-22 gb:AAK02605.1; (AE006087) RpS9 [Pasteurella multocida]; E=5e-22 pir:C82308; ribosomal protein S9 VC0571 [imported] - Vibrio cholerae; E=2e-21 COG: rpsI; COG0103 Ribosomal protein S9; E=1e-23 PFAM: PF00380; Ribosomal protein S9/S16; E=7.2e-51; Belongs to the universal ribosomal protein uS9 family. | 0.995 |
| rplI | rpsK | RB9916 | RB12625 | Ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.994 |
| rplI | rpsS | RB9916 | RB7838 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.995 |
| rplI | rspB | RB9916 | RB10638 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S2; PMID: 6806564 PMID: 6272196 PMID: 7023985 PMID: 10094780 best DB hits: BLAST: pir:F75386; ribosomal protein S2 - Deinococcus radiodurans (strain; E=9e-52 swissprot:Q9WZM1; RS2_THEMA 30S RIBOSOMAL PROTEIN S2 -----; E=2e-51 pdb:1FJF; B Chain B, Structure Of The Thermus Thermophilus 30s; E=2e-50 COG: DR1513; COG0052 Ribosomal protein S2; E=8e-53 PFAM: PF00318; Ribosomal protein S2; E=1.2e-82; Belongs to the universal ribosomal protein uS2 family. | 0.995 |
page 1 of 6