Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RB9930 | RB9932 | RB9930 | RB9932 | Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF01537; Herpesvirus glycoprotein D; E=0.22. | Best DB hits: BLAST: pir:T34932; hypothetical protein SC3F9.10 SC3F9.10 - Streptomyces; E=5e-06 pir:T36189; probable isomerase - Streptomyces coelicolor -----; E=0.001. | 0.482 |
RB9930 | clpX | RB9930 | RB9927 | Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF01537; Herpesvirus glycoprotein D; E=0.22. | ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | 0.401 |
RB9932 | RB9930 | RB9932 | RB9930 | Best DB hits: BLAST: pir:T34932; hypothetical protein SC3F9.10 SC3F9.10 - Streptomyces; E=5e-06 pir:T36189; probable isomerase - Streptomyces coelicolor -----; E=0.001. | Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF01537; Herpesvirus glycoprotein D; E=0.22. | 0.482 |
clpX | RB9930 | RB9927 | RB9930 | ATP-dependent Clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. | Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF01537; Herpesvirus glycoprotein D; E=0.22. | 0.401 |