STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9957Hypothetical protein-signal peptide and transmembrane prediction. (829 aa)    
Predicted Functional Partners:
RB6350
PMID: 10984043 best DB hits: BLAST: pir:E83450; probable cytochrome oxidase subunit (cbb3-type) PA1557; E=1e-134 pir:E81050; cytochrome-c oxidase (EC 1.9.3.1) fixN chain NMB1725; E=1e-132 pir:C83452; probable cytochrome oxidase subunit (cbb3-type) PA1554; E=1e-129 COG: PA1557; COG3278 Cbb3-type cytochrome oxidase, subunit 1; E=1e-135 NMB1724; COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit; E=8e-38 slr1137; COG0843 Heme/copper-type cytochrome/quinol oxidases,; E=6e-12 PFAM: PF00115; Cytochrome C and Quinol oxidase poly; E=3.4e-65 PF02433; Cytochrome C oxidase, mono-heme subu [...]
  
 
 0.973
RB9955
Hypothetical protein-putative conserved hypothetical protein; Best DB hits: PFAM: PF01676; Metalloenzyme superfamily; E=0.78.
 
    0.946
RB4417
Cytochrome-c oxidase chain II/c precursor; PMID: 89231697 PMID: 91161592 best DB hits: BLAST: pir:A23711; cytochrome-c oxidase (EC 1.9.3.1) chain IIc precursor -; E=3e-42 swissprot:Q04441; COX2_BACFI CYTOCHROME C OXIDASE POLYPEPTIDE II; E=5e-38 ddbj:BAB06334.1; (AP001516) cytochrome caa3 oxidase (subunit II); E=2e-35 COG: BH2615_1; COG1622 Heme/copper-type cytochrome/quinol oxidases,; E=2e-21 XF1390; COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit; E=1e-14 slr1136; COG1622 Heme/copper-type cytochrome/quinol oxidases,; E=3e-14 PFAM: PF00116; Cytochrome C oxidase subunit II, [...]
  
 
 0.909
RB12666
Best DB hits: BLAST: gb:AAB91057.1; (AE001094) molybdopterin oxidoreductase, iron-sulfur; E=5e-29 gb:AAG19285.1; (AE005024) molybdopterin oxidoreductase; HmoA; E=3e-26 gb:AAB90738.1; (AE001069) molybdopterin oxidoreductase, iron-sulfur; E=1e-24 COG: AF0175; COG0437 Fe-S-cluster-containing hydrogenase components 1; E=5e-30 PFAM: PF01568; Molydopterin dinucleotide bin; E=0.018 PF00037; 4Fe-4S binding domain; E=0.15.
  
 
 0.886
RB10014
Hypothetical protein; Best DB hits: PFAM: PF01676; Metalloenzyme superfamily; E=0.19.
  
     0.773
RB12533
Hypothetical protein-signal peptide prediction.
  
     0.773
RB3232
Hypothetical protein.
  
     0.773
RB7030
Hypothetical protein.
  
     0.773
RB8022
Hypothetical protein-signal peptide prediction.
  
     0.773
RB2763
Hypothetical protein-signal peptide prediction.
  
     0.772
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.