STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9971Probable NADH-dependent dyhydrogenase; Best DB hits: BLAST: ddbj:BAB05884.1; (AP001514) BH2165~unknown conserved protein; E=3e-11 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=1e-09 gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=2e-09 COG: BH2165; COG0673 Predicted dehydrogenases and related proteins; E=3e-12 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=3.7e-23. (456 aa)    
Predicted Functional Partners:
RB9969
Hypothetical protein.
       0.762
RB5776
NADH-dependent dehydrogenase; PMID: 10086842 best DB hits: BLAST: pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=3e-27 ddbj:BAB07562.1; (AP001520) oxidoreductase [Bacillus halodurans]; E=5e-26 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=3e-23 COG: TM0585; COG0673 Predicted dehydrogenases and related proteins; E=3e-28 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=7.5e-40 PF02894; Oxidoreductase family, C-termi; E=2.8e-10.
  
     0.757
RB3770
Probable NADH-dependent dyhydrogenase; PMID: 10484179 best DB hits: BLAST: ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=3e-19 swissprot:O05389; YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN; E=2e-17 pir:G72391; conserved hypothetical protein - Thermotoga maritima; E=9e-15 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=3e-20 PFAM: PF01408; Oxidoreductase family, NAD-bi; E=1.5e-26.
  
     0.745
RB5727
Probable oxidoreductase; Best DB hits: BLAST: gb:AAD41367.1; AF151698_4 (AF151698) putative oxidoreductase; E=9e-09 pir:H69216; 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related; E=1e-08 pir:T38428; hypothetical oxidoreductase - fission yeast; E=5e-08 COG: MTH875; COG0673 Predicted dehydrogenases and related proteins; E=9e-10 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=9.2e-22.
  
     0.736
RB3442
Probable dehydrogenase; PMID: 10086841 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=1e-08 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=2e-07 pir:D71201; hypothetical protein PH1881 - Pyrococcus horikoshii; E=5e-07 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=1e-09 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=1.2e-14.
  
     0.735
RB5140
Probable NADH-dependent dehydrogenase; PMID: 8472911 best DB hits: BLAST: embl:CAB02496.1; (Z80356) glucose-fructose oxidoreductase; E=2e-07 pdb:1OFG; A Chain A, Glucose-Fructose Oxidoreductase -----; E=2e-07 pdb:1EVJ; A Chain A, Crystal Structure Of Glucose-Fructose; E=2e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=1e-05 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=3.2e-09.
  
     0.696
RB9982
3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related protein; Best DB hits: BLAST: embl:CAC24034.1; (AL512980) ORF-c34_017 [Sulfolobus solfataricus]; E=1e-11 pir:H69216; 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related; E=3e-10 pir:T36464; probable oxidoreductase - Streptomyces coelicolor; E=2e-09 COG: MTH875; COG0673 Predicted dehydrogenases and related proteins; E=3e-11 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=1.1e-09 PF02894; Oxidoreductase family, C-termi; E=0.0018.
  
     0.672
RB7152
Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=5e-09 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=3e-07 PFAM: PF01302; CAP-Gly domain; E=0.33.
  
     0.598
RB7193
Putative oxidoreductase; PMID: 9477341 best DB hits: BLAST: pir:T04014; hypothetical protein F17A8.20 - Arabidopsis thaliana; E=4e-45 pir:T14319; protein AX110P - carrot ----- ddbj: BAA03455.1; E=2e-35 embl:CAB55380.1; (AL117263) putative oxidoreductase [Leishmania; E=6e-35 COG: BH3843; COG0673 Predicted dehydrogenases and related proteins; E=2e-26 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=0.0035 PF02894; Oxidoreductase family, C-termi; E=0.11.
  
     0.598
RB9196
Probable secreted glycosyl hydrolase; Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-05 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=1e-04.
  
    0.596
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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