STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykbAAmino acid permease homolog ykbA; PMID: http://us.expasy.org/cgi-bin/niceprot.pl?Q9WVR6 best DB hits: BLAST: pir:B69855; amino acid permease homolog ykbA - Bacillus subtilis; E=4e-13 swissprot:Q9WVR6; LAT2_RAT LARGE NEUTRAL AMINO ACIDS TRANSPORTER; E=2e-11 embl:CAB69072.1; (Y19022) LAT2 protein [Mus musculus]; E=3e-11 COG: BS_ykbA; COG0531 Amino acid transporters; E=4e-14. (484 aa)    
Predicted Functional Partners:
cls-2
Cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
  
  
 0.669
RB9532
Hypothetical protein.
       0.658
RB12343
Sucrose phosphorylase; PMID: 1368718 best DB hits: BLAST: swissprot:P76041; SUCP_ECOLI PUTATIVE SUCROSE PHOSPHORYLASE; E=1e-123 pir:H64879; probable membrane protein b1309 - Escherichia coli; E=1e-123 ddbj:BAA14878.1; (D90768) Sucrose phosphorylase (EC 2.4.1.7); E=1e-121 COG: ycjM; COG0366 Glycosidases; E=1e-124 PFAM: PF00128; Alpha amylase, catalytic domain; E=0.0025.
   
 0.556
RB2986
Oligo-1,6-glucosidase; PMID: 9692189 best DB hits: BLAST: pir:JE0181; oligo-1,6-glucosidase (EC 3.2.1.10) - Bacillus; E=1e-143 ddbj:BAB18518.1; (AB003697) oligo-1,6-glucosidase [Bacillus; E=1e-143 gb:AAD50603.1; AF096282_1 (AF096282) alpha-glucosidase [Thermus; E=1e-141 COG: DR1375; COG0366 Glycosidases; E=1e-140 PFAM: PF00128; Alpha amylase, catalytic domain; E=1.8e-99.
   
 0.556
RB5196
Alpha-amylase, amylosucrase; PMID: 9882648 PMID: 10411273 best DB hits: BLAST: embl:CAA09772.1; (AJ011781) amylosucrase [Neisseria; E=1e-165 pir:C75457; alpha-amlyase - Deinococcus radiodurans (strain R1); E=1e-123 pir:E75322; probable trehalose synthase - Deinococcus radiodurans; E=4e-41 COG: DR0933; COG0366 Glycosidases; E=1e-124 PFAM: PF00128; Alpha amylase, catalytic domain; E=1.5e-26.
   
 0.556
RB9228
Hypothetical protein.
    
 0.523
aslA-7
Arylsulfatase; PMID: 10336424 best DB hits: BLAST: swissprot:P25549; ASLA_ECOLI ARYLSULFATASE (ARYL-SULFATE; E=4e-62 gb:AAG58993.1; AE005611_3 (AE005611) arylsulfatase [Escherichia; E=6e-62 gb:AAC32036.1; (M90498) putative arylsulfatase [Escherichia coli]; E=1e-54 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=4e-63 PFAM: PF00884; Sulfatase; E=3.6e-42.
       0.490
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
  
 
 0.477
RB5029
Best DB hits: BLAST: embl:CAC11769.1; (AL445064) conserved hypothetical protein; E=9e-08 pir:F70426; conserved hypothetical protein aq_1457 - Aquifex; E=4e-07 embl:CAB88946.1; (AL353863) putative methyltransferase; E=7e-07 COG: Ta0630; COG0500 SAM-dependent methyltransferases; E=9e-09 VC0083; COG2226 Methylase involved in ubiquinone/menaquinone; E=2e-05 aq_262; COG0500 SAM-dependent methyltransferases; E=1e-04.
 
     0.445
RB633
Peroxidase; PMID: 7922023 best DB hits: BLAST: ddbj:BAA83376.1; (AB028841) BbTPO [Branchiostoma belcheri]; E=2e-72 pir:T23007; hypothetical protein K09C8.5 - Caenorhabditis elegans; E=1e-68 gb:AAF51201.1; (AE003582) CG3131 gene product [Drosophila; E=2e-67 PFAM: PF00404; Dockerin type I repeat; E=0.028 PF00141; Peroxidase; E=5.3e-11.
  
     0.402
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.