STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_0010Conserved hypothetical protein; Identified by similarity to GB:AAP86126.1. (144 aa)    
Predicted Functional Partners:
AFE_1732
Hypothetical protein; Identified by glimmer; putative.
   
 
 0.920
AFE_3220
Hypothetical protein; Identified by glimmer; putative.
  
     0.663
AFE_0168
Hypothetical protein; Identified by glimmer; putative.
  
     0.658
AFE_1615
DNA primase TraC; Identified by similarity to SP:P27189; match to protein family HMM PF08401.
  
     0.658
AFE_1695
Conjugal transfer protein; Identified by similarity to SP:P54915; match to protein family HMM PF03524.
  
     0.642
AFE_1726
Conjugal transfer protein TraF, putative; Identified by similarity to SP:Q44350.
  
     0.642
AFE_2298
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.638
AFE_1855
Membrane protein, putative; Identified by match to protein family HMM PF07690.
  
     0.633
AFE_3189
Conserved domain protein; Identified by similarity to GB:CAD18424.1.
  
     0.629
AFE_2093
Hypothetical protein; Identified by glimmer; putative.
  
     0.609
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.