Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AFE_0039RND efflux system, drug efflux transporter, outer membrane lipoprotein; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845. (484 aa)    
Predicted Functional Partners:
AFE_0038
Drug resistance secretion protein, putative; Identified by match to protein family HMM PF00529.
 
   0.932
AFE_0040
Drug resistance transporter, EmrB/QacA family; Identified by match to protein family HMM PF07690.
 
   0.870
AFE_0862
Drug resistance transporter, putative; Identified by match to protein family HMM PF00529.
 
   0.761
AFE_2690
Type I secretion outer membrane protein, putative; Identified by match to protein family HMM PF02321.
  
     0.743
AFE_3264
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.640
AFE_0257
Secretion protein, HlyD family; Identified by match to protein family HMM PF00529.
 
   0.602
AFE_0037
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
    0.597
AFE_2861
Secretion protein, HlyD family; Identified by match to protein family HMM PF00529.
 
   0.515
AFE_1607
Secretion protein, HlyD family; Identified by match to protein family HMM PF00529.
 
   0.506
AFE_2103
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.499
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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