AFE_0043 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFE_0043

Periplasmic solute-binding protein, putative; Identified by similarity to SP:P27366. (336 aa)

Predicted Functional Partners:

nifD

0.757

AFE_0042

0.693

AFE_0041

0.628

AFE_0045

0.593

doxD_2

0.590

AFE_2190

0.555

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_0041	AFE_0042	AFE_0041	AFE_0042	C4-dicarboxylate transporter/malic acid transport protein; Identified by match to protein family HMM PF03595.	Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	0.642
AFE_0041	AFE_0043	AFE_0041	AFE_0043	C4-dicarboxylate transporter/malic acid transport protein; Identified by match to protein family HMM PF03595.	Periplasmic solute-binding protein, putative; Identified by similarity to SP:P27366.	0.628
AFE_0041	doxD_2	AFE_0041	AFE_0044	C4-dicarboxylate transporter/malic acid transport protein; Identified by match to protein family HMM PF03595.	Identified by match to protein family HMM PF07681.	0.523
AFE_0042	AFE_0041	AFE_0042	AFE_0041	Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	C4-dicarboxylate transporter/malic acid transport protein; Identified by match to protein family HMM PF03595.	0.642
AFE_0042	AFE_0043	AFE_0042	AFE_0043	Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	Periplasmic solute-binding protein, putative; Identified by similarity to SP:P27366.	0.693
AFE_0042	doxD_2	AFE_0042	AFE_0044	Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	Identified by match to protein family HMM PF07681.	0.722
AFE_0043	AFE_0041	AFE_0043	AFE_0041	Periplasmic solute-binding protein, putative; Identified by similarity to SP:P27366.	C4-dicarboxylate transporter/malic acid transport protein; Identified by match to protein family HMM PF03595.	0.628
AFE_0043	AFE_0042	AFE_0043	AFE_0042	Periplasmic solute-binding protein, putative; Identified by similarity to SP:P27366.	Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	0.693
AFE_0043	AFE_0045	AFE_0043	AFE_0045	Periplasmic solute-binding protein, putative; Identified by similarity to SP:P27366.	Sulfur/pyrite/thiosulfate/sulfide-induced protein; Identified by similarity to GB:CAC43401.1.	0.593
AFE_0043	AFE_2190	AFE_0043	AFE_2190	Periplasmic solute-binding protein, putative; Identified by similarity to SP:P27366.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.555
AFE_0043	doxD_2	AFE_0043	AFE_0044	Periplasmic solute-binding protein, putative; Identified by similarity to SP:P27366.	Identified by match to protein family HMM PF07681.	0.590
AFE_0043	nifD	AFE_0043	AFE_1521	Periplasmic solute-binding protein, putative; Identified by similarity to SP:P27366.	Nitrogenase molybdenum-iron protein, alpha subunit; Identified by similarity to SP:P06121; match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862.	0.757
AFE_0045	AFE_0043	AFE_0045	AFE_0043	Sulfur/pyrite/thiosulfate/sulfide-induced protein; Identified by similarity to GB:CAC43401.1.	Periplasmic solute-binding protein, putative; Identified by similarity to SP:P27366.	0.593
AFE_0045	doxD_2	AFE_0045	AFE_0044	Sulfur/pyrite/thiosulfate/sulfide-induced protein; Identified by similarity to GB:CAC43401.1.	Identified by match to protein family HMM PF07681.	0.528
AFE_2190	AFE_0043	AFE_2190	AFE_0043	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Periplasmic solute-binding protein, putative; Identified by similarity to SP:P27366.	0.555
doxD_2	AFE_0041	AFE_0044	AFE_0041	Identified by match to protein family HMM PF07681.	C4-dicarboxylate transporter/malic acid transport protein; Identified by match to protein family HMM PF03595.	0.523
doxD_2	AFE_0042	AFE_0044	AFE_0042	Identified by match to protein family HMM PF07681.	Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.	0.722
doxD_2	AFE_0043	AFE_0044	AFE_0043	Identified by match to protein family HMM PF07681.	Periplasmic solute-binding protein, putative; Identified by similarity to SP:P27366.	0.590
doxD_2	AFE_0045	AFE_0044	AFE_0045	Identified by match to protein family HMM PF07681.	Sulfur/pyrite/thiosulfate/sulfide-induced protein; Identified by similarity to GB:CAC43401.1.	0.528
nifD	AFE_0043	AFE_1521	AFE_0043	Nitrogenase molybdenum-iron protein, alpha subunit; Identified by similarity to SP:P06121; match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862.	Periplasmic solute-binding protein, putative; Identified by similarity to SP:P27366.	0.757