AFE_0080 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFE_0080

Membrane protein, putative. (426 aa)

Predicted Functional Partners:

mtfA

0.773

AFE_0078

0.737

AFE_0079

0.732

AFE_0082

0.585

AFE_0076

0.569

AFE_0077

0.556

AFE_0606

0.423

AFE_0611

0.423

AFE_2841

0.423

AFE_2968

0.423

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_0076	AFE_0077	AFE_0076	AFE_0077	Polysaccharide biosynthesis protein; Identified by similarity to SP:P37781; match to protein family HMM PF01943.	Conserved hypothetical protein; Identified by similarity to GB:AAN49860.1; match to protein family HMM PF08241; match to protein family HMM PF08242.	0.801
AFE_0076	AFE_0078	AFE_0076	AFE_0078	Polysaccharide biosynthesis protein; Identified by similarity to SP:P37781; match to protein family HMM PF01943.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.720
AFE_0076	AFE_0079	AFE_0076	AFE_0079	Polysaccharide biosynthesis protein; Identified by similarity to SP:P37781; match to protein family HMM PF01943.	Glycosyltransferase, putative; Identified by similarity to PIR:E96008; match to protein family HMM PF00534.	0.668
AFE_0076	AFE_0080	AFE_0076	AFE_0080	Polysaccharide biosynthesis protein; Identified by similarity to SP:P37781; match to protein family HMM PF01943.	Membrane protein, putative.	0.569
AFE_0076	AFE_0082	AFE_0076	AFE_0082	Polysaccharide biosynthesis protein; Identified by similarity to SP:P37781; match to protein family HMM PF01943.	O antigen biosynthesis rhamnosyltransferase, putative; Identified by similarity to SP:P26403; match to protein family HMM PF00535.	0.465
AFE_0076	mtfA	AFE_0076	AFE_0081	Polysaccharide biosynthesis protein; Identified by similarity to SP:P37781; match to protein family HMM PF01943.	Mannosyltransferase; Identified by similarity to GB:AAF04384.1; match to protein family HMM PF00534.	0.644
AFE_0077	AFE_0076	AFE_0077	AFE_0076	Conserved hypothetical protein; Identified by similarity to GB:AAN49860.1; match to protein family HMM PF08241; match to protein family HMM PF08242.	Polysaccharide biosynthesis protein; Identified by similarity to SP:P37781; match to protein family HMM PF01943.	0.801
AFE_0077	AFE_0078	AFE_0077	AFE_0078	Conserved hypothetical protein; Identified by similarity to GB:AAN49860.1; match to protein family HMM PF08241; match to protein family HMM PF08242.	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.596
AFE_0077	AFE_0079	AFE_0077	AFE_0079	Conserved hypothetical protein; Identified by similarity to GB:AAN49860.1; match to protein family HMM PF08241; match to protein family HMM PF08242.	Glycosyltransferase, putative; Identified by similarity to PIR:E96008; match to protein family HMM PF00534.	0.642
AFE_0077	AFE_0080	AFE_0077	AFE_0080	Conserved hypothetical protein; Identified by similarity to GB:AAN49860.1; match to protein family HMM PF08241; match to protein family HMM PF08242.	Membrane protein, putative.	0.556
AFE_0077	AFE_0082	AFE_0077	AFE_0082	Conserved hypothetical protein; Identified by similarity to GB:AAN49860.1; match to protein family HMM PF08241; match to protein family HMM PF08242.	O antigen biosynthesis rhamnosyltransferase, putative; Identified by similarity to SP:P26403; match to protein family HMM PF00535.	0.440
AFE_0077	mtfA	AFE_0077	AFE_0081	Conserved hypothetical protein; Identified by similarity to GB:AAN49860.1; match to protein family HMM PF08241; match to protein family HMM PF08242.	Mannosyltransferase; Identified by similarity to GB:AAF04384.1; match to protein family HMM PF00534.	0.668
AFE_0078	AFE_0076	AFE_0078	AFE_0076	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Polysaccharide biosynthesis protein; Identified by similarity to SP:P37781; match to protein family HMM PF01943.	0.720
AFE_0078	AFE_0077	AFE_0078	AFE_0077	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Conserved hypothetical protein; Identified by similarity to GB:AAN49860.1; match to protein family HMM PF08241; match to protein family HMM PF08242.	0.596
AFE_0078	AFE_0079	AFE_0078	AFE_0079	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Glycosyltransferase, putative; Identified by similarity to PIR:E96008; match to protein family HMM PF00534.	0.776
AFE_0078	AFE_0080	AFE_0078	AFE_0080	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Membrane protein, putative.	0.737
AFE_0078	AFE_0082	AFE_0078	AFE_0082	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	O antigen biosynthesis rhamnosyltransferase, putative; Identified by similarity to SP:P26403; match to protein family HMM PF00535.	0.547
AFE_0078	mtfA	AFE_0078	AFE_0081	Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.	Mannosyltransferase; Identified by similarity to GB:AAF04384.1; match to protein family HMM PF00534.	0.736
AFE_0079	AFE_0076	AFE_0079	AFE_0076	Glycosyltransferase, putative; Identified by similarity to PIR:E96008; match to protein family HMM PF00534.	Polysaccharide biosynthesis protein; Identified by similarity to SP:P37781; match to protein family HMM PF01943.	0.668
AFE_0079	AFE_0077	AFE_0079	AFE_0077	Glycosyltransferase, putative; Identified by similarity to PIR:E96008; match to protein family HMM PF00534.	Conserved hypothetical protein; Identified by similarity to GB:AAN49860.1; match to protein family HMM PF08241; match to protein family HMM PF08242.	0.642