STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_0100Conserved hypothetical protein; Identified by similarity to GB:AAM71795.1; match to protein family HMM PF00529. (361 aa)    
Predicted Functional Partners:
AFE_0102
ABC transporter, permease protein, putative; Identified by match to protein family HMM PF02687.
 
     0.948
AFE_0101
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.872
AFE_0103
Hypothetical protein; Identified by glimmer; putative.
       0.773
AFE_0654
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
  
 0.583
AFE_0104
Hypothetical protein; Identified by glimmer; putative.
       0.542
AFE_1880
RND efflux system, outer membrane lipoprotein, NodT family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
   0.486
AFE_0108
RND efflux system, outer membrane lipoprotein, NodT family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
   0.474
AFE_2167
Toxin secretion ABC transporter, ATP-binding protein, HlyB family; Identified by similarity to SP:P22520; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412.
  
 
 0.465
AFE_2693
Type I secretion system ATPase; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846.
  
 
 0.465
AFE_0039
RND efflux system, drug efflux transporter, outer membrane lipoprotein; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
 
   0.464
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.