Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
AFE_0158Toluene ABC transporter, ATP-binding protein, putative; Identified by similarity to GB:AAD17957.1; match to protein family HMM PF00005. (276 aa)    
Predicted Functional Partners:
AFE_0159
Toluene tolerance protein Ttg2B, putative; Identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
 
 0.998
AFE_0160
Identified by match to protein family HMM PF02470.
 
 0.997
AFE_0648
ABC transporter, permease protein, putative; Identified by similarity to GB:AAN65776.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
 
 0.990
AFE_0162
Conserved hypothetical protein; Identified by similarity to GB:CAD16664.1.
  
 0.972
AFE_2135
Identified by match to protein family HMM PF02470.
  
 0.959
AFE_0161
Toluene tolerance protein, putative; Identified by match to protein family HMM PF05494.
 
 
 0.954
AFE_0646
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  
 
0.913
AFE_1830
Toluene tolerance protein, putative; Identified by similarity to GB:AAD17960.1; match to protein family HMM PF05494.
  
 
 0.830
AFE_2114
Conserved hypothetical protein; Identified by match to protein family HMM PF05494.
  
 
 0.830
AFE_0163
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    
0.580
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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