Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFE_0171Drug resistance transporter,putative, EmrB/QacA subfamily; Identified by match to protein family HMM PF07690. (534 aa)    
Predicted Functional Partners:
AFE_0038
Drug resistance secretion protein, putative; Identified by match to protein family HMM PF00529.
 
   0.835
AFE_0862
Drug resistance transporter, putative; Identified by match to protein family HMM PF00529.
 
   0.834
AFE_0257
Secretion protein, HlyD family; Identified by match to protein family HMM PF00529.
 
   0.827
AFE_0172
Transcriptional regulator, LysR family; Identified by similarity to SP:P25544; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
       0.561
AFE_0168
Hypothetical protein; Identified by glimmer; putative.
       0.486
argS
arginyl-tRNA synthetase; Identified by similarity to SP:P46906; match to protein family HMM PF00750; match to protein family HMM PF03485; match to protein family HMM PF05746; match to protein family HMM TIGR00456.
       0.486
AFE_0863
RND efflux system, drug efflux transporter, outer membrane lipoprotein; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
   0.434
AFE_0039
RND efflux system, drug efflux transporter, outer membrane lipoprotein; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
   0.414
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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