STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_0412Addiction module toxin, Txe/YoeB family; Identified by match to protein family HMM PF06769; match to protein family HMM TIGR02116. (58 aa)    
Predicted Functional Partners:
AFE_0409
Conserved domain protein; Identified by similarity to GB:AAN79743.1; match to protein family HMM PF08238.
       0.661
AFE_0410
Hypothetical protein; Identified by glimmer; putative.
       0.661
AFE_0411
Hypothetical protein; Identified by glimmer; putative.
       0.661
AFE_0094
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
 
 0.619
AFE_0869
Addiction module antitoxin, Axe family; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
 
 0.619
AFE_0889
Stability protein StbD, putative; Identified by similarity to GB:AAC84003.1; match to protein family HMM PF02604.
  
 
 0.619
AFE_3268
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
 
 0.619
AFE_0413
PIN domain protein; Identified by match to protein family HMM PF01850.
       0.588
AFE_0414
Prevent host death protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.588
AFE_0408
Hypothetical protein; Identified by glimmer; putative.
       0.546
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.