STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mltDMembrane-bound lytic murein transglycosylase D; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476. (612 aa)    
Predicted Functional Partners:
fabI
Enoyl-(acyl-carrier-protein) reductase; Identified by similarity to SP:P29132; match to protein family HMM PF00106.
       0.751
AFE_2223
Penicillin-binding protein 1A, putative; Identified by similarity to SP:P31776; match to protein family HMM PF00905; match to protein family HMM PF00912.
 
  
 0.557
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
 
  
 0.552
gltX-2
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
       0.547
AFE_2895
Peptidoglycan synthetase FtsI, putative; Identified by similarity to SP:P04286; match to protein family HMM PF00905; match to protein family HMM PF03717.
 
 
 0.547
AFE_2144
Penicillin-binding protein 2, putative; Identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423.
 
 
 0.546
AFE_2361
N-acetylmuramoyl-L-alanine amidase, putative; Identified by similarity to SP:Q46929; match to protein family HMM PF01476; match to protein family HMM PF01520; match to protein family HMM TIGR01409.
 
  
 0.526
rlpA
Rare lipoprotein A, putative; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
  
 0.507
AFE_2751
Cell division protein FtsX, putative; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
   
 0.504
AFE_0525
M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01551.
 
   
 0.502
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.