AFE_0562 protein (Acidithiobacillus ferrooxidans)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_0560	AFE_0562	AFE_0560	AFE_0562	Hypothetical protein; Identified by glimmer; putative.	yicC family protein; Identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	0.454
AFE_0560	gmk	AFE_0560	AFE_0563	Hypothetical protein; Identified by glimmer; putative.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.454
AFE_0560	rpoZ	AFE_0560	AFE_0564	Hypothetical protein; Identified by glimmer; putative.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.416
AFE_0562	AFE_0560	AFE_0562	AFE_0560	yicC family protein; Identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	Hypothetical protein; Identified by glimmer; putative.	0.454
AFE_0562	AFE_0566	AFE_0562	AFE_0566	yicC family protein; Identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	Endoribonuclease L-PSP, putative; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	0.571
AFE_0562	AFE_0567	AFE_0562	AFE_0567	yicC family protein; Identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	Conserved hypothetical protein; Identified by similarity to GB:AAL95505.1.	0.513
AFE_0562	AFE_0930	AFE_0562	AFE_0930	yicC family protein; Identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family.	0.414
AFE_0562	gltB	AFE_0562	AFE_0730	yicC family protein; Identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.	0.795
AFE_0562	gmk	AFE_0562	AFE_0563	yicC family protein; Identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.934
AFE_0562	recG	AFE_0562	AFE_0568	yicC family protein; Identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.	0.571
AFE_0562	rpoZ	AFE_0562	AFE_0564	yicC family protein; Identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.818
AFE_0562	spoT	AFE_0562	AFE_0565	yicC family protein; Identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.	0.594
AFE_0566	AFE_0562	AFE_0566	AFE_0562	Endoribonuclease L-PSP, putative; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	yicC family protein; Identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	0.571
AFE_0566	AFE_0567	AFE_0566	AFE_0567	Endoribonuclease L-PSP, putative; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	Conserved hypothetical protein; Identified by similarity to GB:AAL95505.1.	0.781
AFE_0566	gmk	AFE_0566	AFE_0563	Endoribonuclease L-PSP, putative; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.612
AFE_0566	recG	AFE_0566	AFE_0568	Endoribonuclease L-PSP, putative; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.	0.799
AFE_0566	rpoZ	AFE_0566	AFE_0564	Endoribonuclease L-PSP, putative; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.616
AFE_0566	spoT	AFE_0566	AFE_0565	Endoribonuclease L-PSP, putative; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.	0.763
AFE_0567	AFE_0562	AFE_0567	AFE_0562	Conserved hypothetical protein; Identified by similarity to GB:AAL95505.1.	yicC family protein; Identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255.	0.513
AFE_0567	AFE_0566	AFE_0567	AFE_0566	Conserved hypothetical protein; Identified by similarity to GB:AAL95505.1.	Endoribonuclease L-PSP, putative; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004.	0.781