AFE_0595 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFE_0595

Lipoprotein, putative. (127 aa)

Predicted Functional Partners:

miaB

0.548

AFE_0597

0.548

AFE_0594

0.518

ybeY

0.515

AFE_0599

0.515

cutE

0.502

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFE_0594	AFE_0595	AFE_0594	AFE_0595	Phosphatidylethanolamine N-methyltransferase, putative; Identified by similarity to GB:CAB91878.1.	Lipoprotein, putative.	0.518
AFE_0594	cutE	AFE_0594	AFE_0601	Phosphatidylethanolamine N-methyltransferase, putative; Identified by similarity to GB:CAB91878.1.	Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.	0.439
AFE_0595	AFE_0594	AFE_0595	AFE_0594	Lipoprotein, putative.	Phosphatidylethanolamine N-methyltransferase, putative; Identified by similarity to GB:CAB91878.1.	0.518
AFE_0595	AFE_0597	AFE_0595	AFE_0597	Lipoprotein, putative.	PhoH-like protein; Identified by similarity to SP:P77349; match to protein family HMM PF02562.	0.548
AFE_0595	AFE_0599	AFE_0595	AFE_0599	Lipoprotein, putative.	Magnesium and cobalt efflux protein, putative; Identified by similarity to SP:Q9R874; match to protein family HMM PF00571; match to protein family HMM PF03471.	0.515
AFE_0595	cutE	AFE_0595	AFE_0601	Lipoprotein, putative.	Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.	0.502
AFE_0595	miaB	AFE_0595	AFE_0596	Lipoprotein, putative.	tRNA-i(6)A37 modification enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.	0.548
AFE_0595	ybeY	AFE_0595	AFE_0598	Lipoprotein, putative.	Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.515
AFE_0597	AFE_0595	AFE_0597	AFE_0595	PhoH-like protein; Identified by similarity to SP:P77349; match to protein family HMM PF02562.	Lipoprotein, putative.	0.548
AFE_0597	AFE_0599	AFE_0597	AFE_0599	PhoH-like protein; Identified by similarity to SP:P77349; match to protein family HMM PF02562.	Magnesium and cobalt efflux protein, putative; Identified by similarity to SP:Q9R874; match to protein family HMM PF00571; match to protein family HMM PF03471.	0.818
AFE_0597	cutE	AFE_0597	AFE_0601	PhoH-like protein; Identified by similarity to SP:P77349; match to protein family HMM PF02562.	Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.	0.781
AFE_0597	miaB	AFE_0597	AFE_0596	PhoH-like protein; Identified by similarity to SP:P77349; match to protein family HMM PF02562.	tRNA-i(6)A37 modification enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.	0.807
AFE_0597	ybeY	AFE_0597	AFE_0598	PhoH-like protein; Identified by similarity to SP:P77349; match to protein family HMM PF02562.	Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.988
AFE_0599	AFE_0595	AFE_0599	AFE_0595	Magnesium and cobalt efflux protein, putative; Identified by similarity to SP:Q9R874; match to protein family HMM PF00571; match to protein family HMM PF03471.	Lipoprotein, putative.	0.515
AFE_0599	AFE_0597	AFE_0599	AFE_0597	Magnesium and cobalt efflux protein, putative; Identified by similarity to SP:Q9R874; match to protein family HMM PF00571; match to protein family HMM PF03471.	PhoH-like protein; Identified by similarity to SP:P77349; match to protein family HMM PF02562.	0.818
AFE_0599	cutE	AFE_0599	AFE_0601	Magnesium and cobalt efflux protein, putative; Identified by similarity to SP:Q9R874; match to protein family HMM PF00571; match to protein family HMM PF03471.	Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.	0.852
AFE_0599	miaB	AFE_0599	AFE_0596	Magnesium and cobalt efflux protein, putative; Identified by similarity to SP:Q9R874; match to protein family HMM PF00571; match to protein family HMM PF03471.	tRNA-i(6)A37 modification enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.	0.755
AFE_0599	ybeY	AFE_0599	AFE_0598	Magnesium and cobalt efflux protein, putative; Identified by similarity to SP:Q9R874; match to protein family HMM PF00571; match to protein family HMM PF03471.	Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.957
cutE	AFE_0594	AFE_0601	AFE_0594	Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.	Phosphatidylethanolamine N-methyltransferase, putative; Identified by similarity to GB:CAB91878.1.	0.439
cutE	AFE_0595	AFE_0601	AFE_0595	Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.	Lipoprotein, putative.	0.502