Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFE_0602Cation ABC transporter, periplasmic cation-binding protein, putative; Identified by match to protein family HMM PF01297. (294 aa)    
Predicted Functional Partners:
AFE_0603
Cation ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM PF00005.
 
  
 0.998
AFE_0604
Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.
 
  
 0.995
AFE_0605
Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.
 
  
 0.985
AFE_1788
Membrane-associated zinc metalloprotease, putative; Identified by similarity to GB:CAD85637.1; match to protein family HMM PF02163.
     
 0.734
AFE_0022
Hypothetical protein; Identified by glimmer; putative.
      
 0.724
AFE_1143
Hypothetical protein; Identified by glimmer; putative.
      
 0.716
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.640
rpmB
Ribosomal protein L28; Identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.617
rplW
Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
      
 0.470
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
      
 0.460
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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