AFE_0605 protein (Acidithiobacillus ferrooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFE_0605

Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950. (269 aa)

Predicted Functional Partners:

AFE_0603

0.997

AFE_0602

0.985

AFE_0604

0.900

AFE_3026

0.421

AFE_2199

0.410

Your Current Organism:

Acidithiobacillus ferrooxidans

NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
AFE_0602	AFE_0603	Cation ABC transporter, periplasmic cation-binding protein, putative; Identified by match to protein family HMM PF01297.	Cation ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM PF00005.	0.998
AFE_0602	AFE_0604	Cation ABC transporter, periplasmic cation-binding protein, putative; Identified by match to protein family HMM PF01297.	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	0.995
AFE_0602	AFE_0605	Cation ABC transporter, periplasmic cation-binding protein, putative; Identified by match to protein family HMM PF01297.	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	0.985
AFE_0603	AFE_0602	Cation ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM PF00005.	Cation ABC transporter, periplasmic cation-binding protein, putative; Identified by match to protein family HMM PF01297.	0.998
AFE_0603	AFE_0604	Cation ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM PF00005.	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	0.999
AFE_0603	AFE_0605	Cation ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM PF00005.	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	0.997
AFE_0604	AFE_0602	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	Cation ABC transporter, periplasmic cation-binding protein, putative; Identified by match to protein family HMM PF01297.	0.995
AFE_0604	AFE_0603	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	Cation ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM PF00005.	0.999
AFE_0604	AFE_0605	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	0.900
AFE_0604	AFE_2199	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	Identified by match to protein family HMM PF03739.	0.410
AFE_0604	AFE_3026	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.421
AFE_0605	AFE_0602	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	Cation ABC transporter, periplasmic cation-binding protein, putative; Identified by match to protein family HMM PF01297.	0.985
AFE_0605	AFE_0603	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	Cation ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM PF00005.	0.997
AFE_0605	AFE_0604	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	0.900
AFE_0605	AFE_2199	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	Identified by match to protein family HMM PF03739.	0.410
AFE_0605	AFE_3026	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.421
AFE_2199	AFE_0604	Identified by match to protein family HMM PF03739.	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	0.410
AFE_2199	AFE_0605	Identified by match to protein family HMM PF03739.	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	0.410
AFE_2199	AFE_3026	Identified by match to protein family HMM PF03739.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.992
AFE_3026	AFE_0604	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Cation ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00950.	0.421

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About