Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFE_0650Conserved hypothetical protein; Identified by similarity to PIR:H83630. (167 aa)    
Predicted Functional Partners:
AFE_0168
Hypothetical protein; Identified by glimmer; putative.
  
     0.696
AFE_0475
Conserved hypothetical protein; Identified by similarity to GB:AAQ60147.1.
  
     0.693
AFE_1399
Hypothetical protein; Identified by glimmer; putative.
  
     0.637
AFE_3096
Conserved hypothetical protein; Identified by similarity to GB:AAQ58453.1.
  
     0.604
AFE_0646
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.565
AFE_0648
ABC transporter, permease protein, putative; Identified by similarity to GB:AAN65776.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
       0.565
AFE_0549
Conserved hypothetical protein; Identified by similarity to PIR:E82325.
  
     0.536
AFE_0482
Conserved hypothetical protein; Identified by similarity to PIR:B83271.
  
     0.534
AFE_2072
Conserved domain protein.
  
     0.523
AFE_1978
Identified by match to protein family HMM TIGR01352.
  
     0.484
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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