Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFE_0736Type 4 fimbrial biogenesis protein PilP, putative; Identified by similarity to GB:AAA93089.1. (182 aa)    
Predicted Functional Partners:
AFE_0737
Fimbrial assembly protein PilO, putative; Identified by match to protein family HMM PF04350.
 
  
 0.994
AFE_0738
Type IV pilus biogenesis protein PilN; Identified by match to protein family HMM PF05137.
 
  
 0.993
AFE_0735
Fimbrial assembly protein PilQ, putative; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.
 
 
 0.988
AFE_0739
Type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726; match to protein family HMM TIGR01175.
 
  
 0.962
AFE_1915
Type IV pilus assembly protein PilZ, putative; Identified by similarity to PIR:B59241; match to protein family HMM PF07238.
  
   
 0.839
AFE_0018
LysM domain protein; Identified by match to protein family HMM PF01476.
  
     0.757
AFE_2072
Conserved domain protein.
  
    0.719
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.677
AFE_0743
Conserved domain protein.
 
     0.635
AFE_1935
Conserved hypothetical protein; Identified by similarity to GB:AAQ61198.1.
  
     0.615
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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