STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_0786Heme-utilization protein HutZ, putative; Identified by similarity to GB:AAG23392.1; match to protein family HMM PF01243. (173 aa)    
Predicted Functional Partners:
AFE_1489
Iron compound ABC transporter, periplasmic iron-binding protein, putative; Identified by match to protein family HMM PF01497.
  
    0.606
AFE_1494
Iron compound ABC transporter, periplasmic iron-binding protein, putative; Identified by match to protein family HMM PF01497.
  
    0.606
AFE_0707
Conserved hypothetical protein; Identified by similarity to PIR:AI1892.
  
     0.566
AFE_0787
Identified by match to protein family HMM PF01522.
       0.560
AFE_0711
NHL repeat protein; Identified by match to protein family HMM PF01436.
  
     0.536
AFE_2577
Conserved hypothetical protein; Identified by similarity to PIR:A81195.
  
     0.492
hybC
Hydrogenase-2, large subunit; Identified by match to protein family HMM PF00374.
  
     0.481
AFE_0401
roadblock/LC7 domain protein; Identified by match to protein family HMM PF03259.
  
     0.477
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:P09831; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898.
     
 0.450
AFE_2578
roadblock/LC7 domain protein; Identified by match to protein family HMM PF03259.
  
     0.447
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.