Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFE_0969Type IV pilin, putative; Identified by match to protein family HMM TIGR02532. (377 aa)    
Predicted Functional Partners:
AFE_0967
Type IV pilin biogenesis protein, putative; Identified by similarity to GB:AAQ58159.1.
 
  
 0.992
AFE_0971
Pilin signal sequence domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 0.982
pilC
Type IV pilus biogenesis protein PilC; Identified by similarity to SP:P45793; match to protein family HMM PF00482.
     
 0.827
AFE_0970
Type IV pilin, putative; Identified by similarity to GB:AAB48595.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
       0.799
AFE_0968
Hypothetical protein; Identified by glimmer; putative.
       0.785
AFE_1497
Conserved hypothetical protein; Identified by match to protein family HMM PF03573.
  
     0.763
AFE_2935
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
  
     0.758
AFE_1991
Conserved hypothetical protein; Identified by similarity to GB:BAC50343.1; match to protein family HMM PF03573.
  
     0.754
AFE_2292
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
  
     0.754
AFE_0137
Conserved hypothetical protein; Identified by similarity to PIR:D83343.
  
     0.753
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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