STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_0969Type IV pilin, putative; Identified by match to protein family HMM TIGR02532. (377 aa)    
Predicted Functional Partners:
AFE_0967
Type IV pilin biogenesis protein, putative; Identified by similarity to GB:AAQ58159.1.
 
  
 0.993
AFE_0971
Pilin signal sequence domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 0.980
pilC
Type IV pilus biogenesis protein PilC; Identified by similarity to SP:P45793; match to protein family HMM PF00482.
     
 0.831
AFE_0970
Type IV pilin, putative; Identified by similarity to GB:AAB48595.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
     
 0.800
AFE_0968
Hypothetical protein; Identified by glimmer; putative.
       0.785
AFE_1497
Conserved hypothetical protein; Identified by match to protein family HMM PF03573.
  
     0.763
AFE_2935
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
  
     0.758
AFE_1991
Conserved hypothetical protein; Identified by similarity to GB:BAC50343.1; match to protein family HMM PF03573.
  
     0.754
AFE_2292
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
  
     0.754
AFE_0137
Conserved hypothetical protein; Identified by similarity to PIR:D83343.
  
     0.753
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.