STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_0970Type IV pilin, putative; Identified by similarity to GB:AAB48595.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532. (166 aa)    
Predicted Functional Partners:
AFE_0971
Pilin signal sequence domain protein; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
     
 0.949
pilC
Type IV pilus biogenesis protein PilC; Identified by similarity to SP:P45793; match to protein family HMM PF00482.
  
  
 0.875
AFE_0416
Pilin, putative; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
 
 0.852
AFE_1097
Conjugal transfer protein TraN, putative; Identified by similarity to SP:P24082.
  
 
 0.852
pilD
Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.820
AFE_0967
Type IV pilin biogenesis protein, putative; Identified by similarity to GB:AAQ58159.1.
       0.799
AFE_0969
Type IV pilin, putative; Identified by match to protein family HMM TIGR02532.
       0.799
AFE_0968
Hypothetical protein; Identified by glimmer; putative.
       0.784
AFE_0973
Type IV pilin biogenesis peptidase, putative; Identified by similarity to SP:P24213; match to protein family HMM PF01343; match to protein family HMM PF08496.
       0.519
AFE_0966
Conserved hypothetical protein.
       0.412
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.