STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1023HNH endonuclease domain protein; Identified by match to protein family HMM PF01844. (454 aa)    
Predicted Functional Partners:
AFE_1304
Transposon, resolvase; A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376.
  
     0.704
AFE_1033
Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.
  
     0.644
AFE_1024
Membrane-associated zinc metalloprotease, putative; Identified by similarity to GB:AAP58571.1; match to protein family HMM PF02163.
       0.608
AFE_1105
Transposon, resolvase; Adjacent to a gene for transposase; identified by match to protein family HMM PF00239.
  
     0.577
AFE_1215
ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.
  
     0.542
AFE_1058
ISAfe8, transposase; Identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766.
  
     0.540
AFE_1025
Hypothetical protein; Identified by glimmer; putative.
       0.477
AFE_1034
Transposon, transposase; Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282.
  
     0.454
AFE_1022
Identified by match to protein family HMM PF01734.
       0.424
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.