Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AFE_1055Hypothetical protein; Identified by glimmer; putative. (179 aa)    
Predicted Functional Partners:
AFE_1053
Conserved domain protein; Identified by similarity to GB:AAF69908.1; match to protein family HMM PF01507.
       0.773
AFE_1054
Hypothetical protein; Identified by glimmer; putative.
       0.773
AFE_0569
Identified by match to protein family HMM PF03734.
      
 0.722
AFE_0998
Transcriptional regulator, putative; Identified by similarity to SP:Q06553; match to protein family HMM PF00717; match to protein family HMM PF01381; match to protein family HMM PF07022.
      
 0.722
AFE_1354
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
      
 0.722
AFE_1942
Hypothetical protein; Identified by glimmer; putative.
      
 0.722
AFE_1052
Hypothetical protein; Identified by glimmer; putative.
       0.615
AFE_1051
Hypothetical protein; Identified by glimmer; putative.
       0.561
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
      
 0.443
AFE_1848
Base excision repair protein, HhH-GPD family; Identified by similarity to SP:P37878; match to protein family HMM PF00730.
      
 0.440
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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