STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1065Conjugal transfer protein, putative; Identified by similarity to GB:BAC81997.1; match to protein family HMM PF01464. (196 aa)    
Predicted Functional Partners:
AFE_1066
Pilus assembly protein TraF, putative.
   
   0.594
AFE_1067
Pilus assembly protein TraH, putative; Identified by similarity to SP:P15069.
       0.591
AFE_1068
Pilus assembly protein TraG, putative; Identified by similarity to GB:AAK61533.1.
       0.564
AFE_1064
Hypothetical protein; Identified by glimmer; putative.
       0.553
AFE_0105
Metal ion transporter, NRAMP family; Identified by match to protein family HMM PF01566.
  
     0.501
AFE_1498
ABC transporter, periplasmic substrate-binding protein, putative; Identified by match to protein family HMM PF01547.
  
     0.463
AFE_1069
Hypothetical protein; Identified by glimmer; putative.
       0.413
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.