Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
traEType IV conjugative transfer system protein TraE; Identified by similarity to GB:AAL27019.1; match to protein family HMM TIGR02761. (204 aa)    
Predicted Functional Partners:
AFE_1081
Conjugal transfer protein, putative; Identified by similarity to GB:AAD54048.1.
 
     0.950
traK
TraK lipoprotein, putative; Identified by similarity to GB:AAM90706.1.
       0.799
AFE_1096
Conjugal transfer protein TraU, putative; Identified by similarity to SP:P18471.
 
     0.793
AFE_1097
Conjugal transfer protein TraN, putative; Identified by similarity to SP:P24082.
 
     0.786
AFE_1066
Pilus assembly protein TraF, putative.
 
     0.781
AFE_1077
Hypothetical protein; Identified by glimmer; putative.
       0.777
traL
Type IV conjugative transfer system protein TraL; Identified by similarity to GB:AAM08076.1; match to protein family HMM TIGR02762.
       0.777
traV
Conjugal transfer protein TraV, putative; Identified by similarity to SP:P41069; match to protein family HMM TIGR02747.
       0.777
AFE_1095
Pilus assembly protein TraW, putative; Identified by similarity to SP:P18472.
 
     0.777
AFE_1068
Pilus assembly protein TraG, putative; Identified by similarity to GB:AAK61533.1.
  
     0.773
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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