Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
traCtype-IV secretion system protein TraC; Identified by similarity to SP:P18004; match to protein family HMM TIGR02746. (866 aa)    
Predicted Functional Partners:
AFE_1086
Hypothetical protein; Identified by glimmer; putative.
     
 0.837
AFE_1091
Conjugation signal peptidase TraF, putative; Identified by similarity to SP:P26844; similarity to GB:AAL59670.1.
 
   
 0.828
AFE_1695
Conjugal transfer protein; Identified by similarity to SP:P54915; match to protein family HMM PF03524.
  
  
 0.811
AFE_1096
Conjugal transfer protein TraU, putative; Identified by similarity to SP:P18471.
 
   
 0.803
AFE_1095
Pilus assembly protein TraW, putative; Identified by similarity to SP:P18472.
 
   
 0.797
AFE_1067
Pilus assembly protein TraH, putative; Identified by similarity to SP:P15069.
 
   
 0.790
AFE_1097
Conjugal transfer protein TraN, putative; Identified by similarity to SP:P24082.
 
   
 0.790
AFE_1081
Conjugal transfer protein, putative; Identified by similarity to GB:AAD54048.1.
 
     0.786
AFE_1066
Pilus assembly protein TraF, putative.
 
     0.780
AFE_1087
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437.
  
    0.777
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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