STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFE_1091Conjugation signal peptidase TraF, putative; Identified by similarity to SP:P26844; similarity to GB:AAL59670.1. (184 aa)    
Predicted Functional Partners:
traC
type-IV secretion system protein TraC; Identified by similarity to SP:P18004; match to protein family HMM TIGR02746.
 
   
 0.827
AFE_1088
Thiol:disulfide interchange protein, DsbA family; Identified by similarity to SP:Q44504.
 
     0.809
AFE_1087
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437.
       0.773
AFE_1090
Hypothetical protein; Identified by glimmer; putative.
       0.773
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.567
AFE_1093
Hypothetical protein; Identified by glimmer; putative.
       0.511
AFE_1086
Hypothetical protein; Identified by glimmer; putative.
       0.457
AFE_1095
Pilus assembly protein TraW, putative; Identified by similarity to SP:P18472.
 
     0.449
Your Current Organism:
Acidithiobacillus ferrooxidans
NCBI taxonomy Id: 243159
Other names: A. ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans ATCC 23270, Acidithiobacillus ferrooxidans str. ATCC 23270
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.